Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0435
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024817-3|AAK68524.1|  482|Caenorhabditis elegans Hypothetical ...    32   0.38 
Z75710-9|CAB00024.2|  752|Caenorhabditis elegans Hypothetical pr...    31   0.66 
U42848-2|AAA83608.2|  315|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AF045643-6|AAC02593.2|  570|Caenorhabditis elegans Hypothetical ...    30   1.5  
Z79752-2|CAB02079.1|  172|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z81522-8|CAB04231.2|  786|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z29094-10|CAD45580.2|  965|Caenorhabditis elegans Hypothetical p...    29   4.7  
Z29094-9|CAA82347.3|  960|Caenorhabditis elegans Hypothetical pr...    29   4.7  
U53344-7|AAM15599.1|  183|Caenorhabditis elegans Hypothetical pr...    29   4.7  
U53344-6|AAK77632.2|  702|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AY450852-1|AAR18092.1|  960|Caenorhabditis elegans Tousled-like ...    29   4.7  
U67951-5|AAB07574.2|  778|Caenorhabditis elegans Degeneration of...    28   6.2  
L34414-1|AAA99524.1|  778|Caenorhabditis elegans degenerin protein.    28   6.2  
Z36238-2|CAA85274.1|  378|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z27080-3|CAA81604.3|  379|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>AC024817-3|AAK68524.1|  482|Caenorhabditis elegans Hypothetical
           protein Y54G2A.11a protein.
          Length = 482

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 21/83 (25%), Positives = 34/83 (40%)
 Frame = +3

Query: 147 PRDIGDSYEFKVPNKQADIILSVETTESNAKTYKDIVVPLVSHLIDSLKSKHITDVKVFL 326
           PR +   Y F+VP    D  L  + +E  +  +K+ V P +     S K KH+  ++  L
Sbjct: 206 PRPVPSDYLFEVPAFPEDFGLQRQNSEKRSDVWKEFVKPAMRKAPLSDKKKHLHMLRDIL 265

Query: 327 VGHTSKYPYPILYDTDLKLKNAH 395
               +  P       D+   N H
Sbjct: 266 RRPKASKPIRSFEILDIFTNNTH 288


>Z75710-9|CAB00024.2|  752|Caenorhabditis elegans Hypothetical
           protein D1081.3 protein.
          Length = 752

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
 Frame = +3

Query: 246 KDIVVPLVSHLIDSLKSKHITDVKVFLVGH--TSKYPYPILYDTDLKLKNAHVH-FDDKE 416
           K+I VP + ++  ++     T+  VFL GH  ++K PY  L    LK+KN H   +   +
Sbjct: 488 KNISVPCIPYVSANV----YTNDDVFLYGHATSTKNPYSTLQFKPLKIKNLHDDGWICTD 543

Query: 417 RYNNIPTIKTGYESFDKYEDQIISIINDLKNTYGFNN 527
           +Y  +     G      Y+D++ +I   +K+T G+N+
Sbjct: 544 KYQAMQ--DRGGPLVKLYDDKVTAI--GIKSTTGYNS 576


>U42848-2|AAA83608.2|  315|Caenorhabditis elegans Hypothetical
           protein C31H1.5 protein.
          Length = 315

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 334 IPPNIHIRSCMTLTSN*KTPTYTSTTRNATITSPP 438
           +P  +H +   T TS   T T  STT+N T+T  P
Sbjct: 241 LPFYLHYKEDTTTTSTTDTTTTISTTKNTTVTQKP 275


>AF045643-6|AAC02593.2|  570|Caenorhabditis elegans Hypothetical
           protein F58H7.2 protein.
          Length = 570

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 25/105 (23%), Positives = 49/105 (46%)
 Frame = +3

Query: 342 KYPYPILYDTDLKLKNAHVHFDDKERYNNIPTIKTGYESFDKYEDQIISIINDLKNTYGF 521
           K+  P+LY  D+ +    V F +   YN+   +K GY +FD Y+    +    ++ T   
Sbjct: 292 KWNDPLLYKKDVYMPP--VKFQEN-LYNSEKPLKIGYYTFDGYQTASPAYQRAVRETVAV 348

Query: 522 NNIEASKQSLFDLPVRPGAIKHLVFAIGEPCIGRCFLLDAIESAI 656
                 +   F++P +P  + + +F  G    G  +L+D++ + I
Sbjct: 349 LKELGHELVPFEVP-QPDHM-YSIFCAGATADGGLYLMDSLANDI 391


>Z79752-2|CAB02079.1|  172|Caenorhabditis elegans Hypothetical
           protein D2005.2 protein.
          Length = 172

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = +3

Query: 312 VKVFLVGHTSKYPYPILYDTDLKLKNAHVHFDDKERYNNIPTIKTGYESFDKYEDQ 479
           ++  L+G T+ YPY I   +     +  +     +R++N      G + FD+Y+D+
Sbjct: 16  LQCLLIGFTAAYPYLIFPASPSSGDSRRLVKRAFDRFDNSGVFSFGAKRFDRYDDE 71


>Z81522-8|CAB04231.2|  786|Caenorhabditis elegans Hypothetical
           protein F32B4.8 protein.
          Length = 786

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 612 CIGRCFLLDAIESAIYDVIFKNMGGYDIADHGHTRPQDGR 731
           C+   + +     A+Y+ I KN+ G  I   GHT+  DG+
Sbjct: 538 CLATTYSMPLATCAMYEEI-KNLAGNTIRSQGHTKCPDGQ 576


>Z29094-10|CAD45580.2|  965|Caenorhabditis elegans Hypothetical
           protein C07A9.3b protein.
          Length = 965

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -3

Query: 646 SIASSRKHRPIHG-SPIAKTKCLIAPGLTGRSNNDCLLASMLLNPYVF 506
           S  SS  H PI G SP+      +A G TGR  N   ++S +L    F
Sbjct: 45  SSGSSSNHAPIVGESPLGTVSSTMATGDTGRVGNVTYMSSGMLGATQF 92


>Z29094-9|CAA82347.3|  960|Caenorhabditis elegans Hypothetical
           protein C07A9.3a protein.
          Length = 960

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -3

Query: 646 SIASSRKHRPIHG-SPIAKTKCLIAPGLTGRSNNDCLLASMLLNPYVF 506
           S  SS  H PI G SP+      +A G TGR  N   ++S +L    F
Sbjct: 45  SSGSSSNHAPIVGESPLGTVSSTMATGDTGRVGNVTYMSSGMLGATQF 92


>U53344-7|AAM15599.1|  183|Caenorhabditis elegans Hypothetical
           protein T07H6.1b protein.
          Length = 183

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 330 GHTSKYPYPILYDTDLKLKNAHVHFDDKERYNNIPTIKTGYESFDKYED 476
           G++S+Y   +  D  LKL    +HF D + +N    + T Y S D   D
Sbjct: 73  GNSSQY---VSLDVPLKLLEGEIHFPDAQFWNTEAELITRYVSKDSETD 118


>U53344-6|AAK77632.2|  702|Caenorhabditis elegans Hypothetical
           protein T07H6.1a protein.
          Length = 702

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 330 GHTSKYPYPILYDTDLKLKNAHVHFDDKERYNNIPTIKTGYESFDKYED 476
           G++S+Y   +  D  LKL    +HF D + +N    + T Y S D   D
Sbjct: 592 GNSSQY---VSLDVPLKLLEGEIHFPDAQFWNTEAELITRYVSKDSETD 637


>AY450852-1|AAR18092.1|  960|Caenorhabditis elegans Tousled-like
           kinase protein.
          Length = 960

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -3

Query: 646 SIASSRKHRPIHG-SPIAKTKCLIAPGLTGRSNNDCLLASMLLNPYVF 506
           S  SS  H PI G SP+      +A G TGR  N   ++S +L    F
Sbjct: 45  SSGSSSNHAPIVGESPLGTVSSTMATGDTGRVGNVTYMSSGMLGATQF 92


>U67951-5|AAB07574.2|  778|Caenorhabditis elegans Degeneration of
           certain neuronsprotein 1 protein.
          Length = 778

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 343 NIHIRSCMTLTSN*KTPTYTSTTRNATITSPPS 441
           N+   S  T T+    PT TSTT   T T PP+
Sbjct: 342 NMTTTSTTTTTTTTPPPTTTSTTTTTTTTPPPT 374


>L34414-1|AAA99524.1|  778|Caenorhabditis elegans degenerin protein.
          Length = 778

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 343 NIHIRSCMTLTSN*KTPTYTSTTRNATITSPPS 441
           N+   S  T T+    PT TSTT   T T PP+
Sbjct: 342 NMTTTSTTTTTTTTPPPTTTSTTTTTTTTPPPT 374


>Z36238-2|CAA85274.1|  378|Caenorhabditis elegans Hypothetical
           protein R74.4 protein.
          Length = 378

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +3

Query: 450 YESFDKYEDQIISIINDLKN---TYGFNNIEASKQSLFDLPVRPGAIKHL 590
           +   D +E Q  +++   K+    YG N I   K S+  LPV P A++ L
Sbjct: 244 FHYLDSFEMQTATLLETRKHYIAVYGDNWISDVKYSITFLPVEPSAVEQL 293


>Z27080-3|CAA81604.3|  379|Caenorhabditis elegans Hypothetical
           protein F55H2.7 protein.
          Length = 379

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = +1

Query: 394 TYTSTTRNATITSPPSRLGMNPXXXXXXXXXXXXXXXKIHMDSTTSKPASNRC 552
           T ++TT N+TI   PS    N                ++  D T+S+P   RC
Sbjct: 131 TTSATTSNSTIRGKPSFGRENSAKIERTTPRLVPRMPRVSSDQTSSRPKEERC 183


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,143,344
Number of Sequences: 27780
Number of extensions: 402583
Number of successful extensions: 1271
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1267
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)