Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0435
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24610.1 68416.m03091 kelch repeat-containing F-box family pr...    31   1.1  
At4g30100.1 68417.m04280 tRNA-splicing endonuclease positive eff...    29   4.4  
At2g40360.1 68415.m04977 transducin family protein / WD-40 repea...    29   4.4  
At2g19120.1 68415.m02232 tRNA-splicing endonuclease positive eff...    29   4.4  
At4g08740.1 68417.m01442 hypothetical protein                          28   7.6  
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t...    28   7.6  
At1g27270.1 68414.m03322 paired amphipathic helix repeat-contain...    28   7.6  
At1g03080.1 68414.m00282 kinase interacting family protein simil...    28   7.6  

>At3g24610.1 68416.m03091 kelch repeat-containing F-box family
           protein contains Pfam profiles PF01344: Kelch motif,
           PF00646: F-box domain
          Length = 445

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 377 EVSVIQDRIWIFGGMSYKEHFDVSNVF 297
           EVSV+  +I ++GG  YK ++D   VF
Sbjct: 201 EVSVVDGKINVWGGCKYKHYYDWGEVF 227


>At4g30100.1 68417.m04280 tRNA-splicing endonuclease positive
            effector-related contains similarity to SEN1, a positive
            effector of tRNA-splicing endonuclease [Saccharomyces
            cerevisiae] gi|172574|gb|AAB63976
          Length = 1311

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 635  EQEASSDTRFTNSEDQVFDSTRSD-RKIEQRLLAGFDVV 522
            E  AS +  F N  + VF +  S  RK+  RL  GFD+V
Sbjct: 903  EARASLEASFANEAEIVFTTVSSSGRKLFSRLTHGFDMV 941


>At2g40360.1 68415.m04977 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to block of proliferation protein Bop1
           (GI:1679772) [Mus musculus]
          Length = 753

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = +3

Query: 291 KSKHITDV---KVFLVGHTSKYPYPILYDTDLKLKNAHVHFDDKERYNNIPTIKTGYESF 461
           KSKH+T +   K+ L GH   Y   + Y    + K ++    +++R   IPT  T   S 
Sbjct: 304 KSKHLTYIPPPKLKLPGHDESYNPSLEYIPTEEEKASYELMFEEDRPKFIPTRFTSLRSI 363

Query: 462 DKYEDQI 482
             YE+ +
Sbjct: 364 PAYENAL 370


>At2g19120.1 68415.m02232 tRNA-splicing endonuclease positive
           effector-related similar to Endonuclease sen1
           (Swiss-Prot:Q92355) [Schizosaccharomyces pombe]; similar
           to tRNA-splicing endonuclease positive effector
           (Swiss-Prot:Q00416) [Saccharomyces cerevisiae]
          Length = 1090

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 635 EQEASSDTRFTNSEDQVFDSTRSD-RKIEQRLLAGFDVV 522
           E  AS +  F N  + VF +  S  RK+  RL  GFD+V
Sbjct: 740 EARASLEASFANEAEIVFTTVSSSGRKLFSRLTHGFDMV 778


>At4g08740.1 68417.m01442 hypothetical protein 
          Length = 213

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/50 (30%), Positives = 33/50 (66%), Gaps = 4/50 (8%)
 Frame = +1

Query: 535 PASNRCSIFLSDRVLSNTWSS----LLVNRVSDDASCSTQSSQPFTM*SS 672
           P+S+   +FL +++LS++W++    + VN++  ++SC+T +   F + SS
Sbjct: 78  PSSSSNQLFLVNKLLSSSWTTSDQLVFVNKLI-NSSCTTSNQLVFILGSS 126


>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
           RNA Binding Protein 47 [Nicotiana plumbaginifolia]
           GI:9663769, DNA binding protein ACBF GB:AAC49850 from
           [Nicotiana tabacum]; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 435

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 470 RGPNHQYHQRLEKYIWIQQHRSQQ 541
           +GP  Q+H +L +Y   QQH+ QQ
Sbjct: 72  QGPYQQHHPQLHQYGSYQQHQHQQ 95


>At1g27270.1 68414.m03322 paired amphipathic helix repeat-containing
           protein contains Pfam profile PF02671: Paired
           amphipathic helix repeat
          Length = 241

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = +3

Query: 378 KLKNAHVHFDDKERYNNIPTIKTGYESFDKYEDQIISIINDLKNTYGFNNIEASKQSL 551
           K K+   +F+D   Y +   +       +KY++ +   I+   N +GF  + AS Q L
Sbjct: 4   KSKSPEFNFEDGMAYFDAVKVALQDTEPEKYQEFVRIFIDYTANRFGFETLSASLQEL 61


>At1g03080.1 68414.m00282 kinase interacting family protein similar to
            kinase interacting protein 1 (GI:13936326) [Petunia
            integrifolia]
          Length = 1744

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +3

Query: 372  DLKLKNAHVHFDDKERYNNIPTIKTGYESFDKYEDQIISIINDL--KNTYGFNNIEASKQ 545
            DLK+K      D+K + N   TIK      ++  ++++SI   L  K   GF   + SK 
Sbjct: 1589 DLKIKVETEEKDEKGKENEYETIKGQINEAEEALEKLLSINRKLVTKVQNGFERSDGSKS 1648

Query: 546  SL 551
            S+
Sbjct: 1649 SM 1650


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,975,069
Number of Sequences: 28952
Number of extensions: 368396
Number of successful extensions: 1029
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)