Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0434
         (472 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    29   0.47 
SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces po...    26   2.5  
SPAC1610.02c |||mitochondrial ribosomal protein subunit L1|Schiz...    26   2.5  
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom...    26   3.3  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    25   5.8  

>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 28.7 bits (61), Expect = 0.47
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 448 KLYKIPLITLSFCFYLSFFIPFGDNFIAIITK 353
           K +  PL+ L +C Y+S F+   D F  ++ K
Sbjct: 107 KAWTQPLVFLYYCAYISKFLELTDTFFLVLRK 138


>SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -1

Query: 430 LITLSFCF-YLSFFIPFGDNFIAIITKFS 347
           +I++ F F Y+ FF+P G   + + TKFS
Sbjct: 193 VISIIFSFAYMDFFLPRGGFLVWVETKFS 221


>SPAC1610.02c |||mitochondrial ribosomal protein subunit
           L1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 253

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -3

Query: 212 YIYLLNRHLNCFHRRAVMPSMSKRLHSESLTVPIALSYESSISL 81
           +I  LN+  N       +P  +K L S S++VP   SY  SI+L
Sbjct: 32  FISQLNKKSNFPALAMTVPEATKYLKSVSISVPYVGSYMLSIAL 75


>SPBC2F12.13 |klp5|sot1|kinesin-like protein
           Klp5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 883

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 75  CNTDTILCISINSLHYKDYKRT 10
           C T  I+C+S +S+HY++   T
Sbjct: 359 CRTVMIVCVSPSSVHYEETHNT 380


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 10/37 (27%), Positives = 24/37 (64%)
 Frame = -2

Query: 447 NFIRFL*SHYPFVFIYHSLFLSETILLQSLQNSVKRE 337
           N  + + + Y F+++ +SL ++  +L  S++ S+K+E
Sbjct: 60  NLFKVINTTYTFLYLRNSLTITFPLLNSSVKQSLKKE 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,750,968
Number of Sequences: 5004
Number of extensions: 32845
Number of successful extensions: 66
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)