Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0433
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    27   2.6  
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    27   3.4  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    26   4.5  
SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein Spo14|Sch...    25   7.9  

>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +1

Query: 97  LTPNITDIVSIAVAAYEG---GANGVSAINTVSGLMSVKADATPWPAVGKQKR 246
           LTP+ TD  S  V++ +     A+  +A NTVS      + ATP P    Q++
Sbjct: 153 LTPSTTDSSSTDVSSSDSVSTSASSSNASNTVSVTSPASSSATPLPNQPSQQQ 205


>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 351 RYRLC*FGTTVHLVWCT 401
           RYR C +G  + L WCT
Sbjct: 272 RYRFCFYGYVLWLCWCT 288


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 682  QHSRRPVNLILIYFDGESVRVFCCKYRSVSVP 587
            +HS RPV L  IY DG   R +C +  S++ P
Sbjct: 1321 RHSVRPVPLE-IYIDGFPGRAYCPRMMSMNKP 1351


>SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein
           Spo14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 580 NGKVLTHFGIYNKKREQILHQNRLKLGLLDDD 675
           +GK++ H  +Y +K +    +N L+L   D+D
Sbjct: 91  DGKLIDHLRLYGRKDKLFEEKNALRLTDFDND 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,048,352
Number of Sequences: 5004
Number of extensions: 65841
Number of successful extensions: 172
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)