Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0433
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0670 - 30764007-30764135,30764404-30764548,30765200-307653... 85 4e-17
12_02_0378 + 18349089-18350402,18351109-18351155,18351266-18351368 31 1.2
10_01_0183 + 2056891-2056947,2059136-2060089 29 2.7
06_03_0996 + 26731442-26732121,26732573-26732772,26732930-26733330 28 6.2
02_01_0574 + 4247469-4248196,4249501-4249691,4250565-4251022 28 6.2
01_01_0118 - 871481-872606,872795-872950,873051-873817 28 6.2
11_05_0065 + 18766566-18766576,18767023-18767083,18767170-187672... 28 8.2
06_01_0857 + 6502039-6502530 28 8.2
01_01_0879 + 6896587-6896701,6896819-6897005,6897475-6897774,689... 28 8.2
>02_05_0670 -
30764007-30764135,30764404-30764548,30765200-30765309,
30765578-30765761,30765857-30765969,30766242-30766412,
30766493-30766756,30767537-30767782
Length = 453
Score = 85.4 bits (202), Expect = 4e-17
Identities = 55/184 (29%), Positives = 86/184 (46%), Gaps = 7/184 (3%)
Frame = +1
Query: 7 MGLACGQDPVLVKGISQWVRKAIKIPFFVKLTPNITDIVSIAVAAYEGGANGVSAINTVS 186
MG A GQD L++ + W+ + +P + K+TPNITDI A + + G GVSAINT+
Sbjct: 188 MGAAVGQDCDLLEEVCGWINEKATVPVWAKMTPNITDITKPARISLKSGCEGVSAINTIM 247
Query: 187 GLMSVKADA-TPWPAVGKQKRTTYGGVSGNATRPIGLRAVSAVGNK-----XXXXXXXXX 348
+M + P P V + +T GG S A PI L V +
Sbjct: 248 SVMGINLKTLRPEPCV--EGYSTPGGYSARAVHPIALAKVMQIARMMKEEFADGQSLSAI 305
Query: 349 XXXDSADSALQFILCGAPVVQICSAVQNQDFTVVEDYITGLKALLYLRS-RGLDGWTGQS 525
++ + A +FIL GA VQ+C+ V + +V+ L+ + + ++ + G S
Sbjct: 306 GGVETGNDAAEFILLGADTVQVCTGVMMHGYGLVKKLCAELQDFMRQHNFSSIEDFRGAS 365
Query: 526 PPTF 537
P F
Sbjct: 366 LPYF 369
>12_02_0378 + 18349089-18350402,18351109-18351155,18351266-18351368
Length = 487
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 10/54 (18%)
Frame = -3
Query: 374 AESAESIPPM-PSIGNPGNLF---------PTAETARNPIGRVAFPDTPP*VVR 243
A+S E PP+ P G+P + P+ TAR P+ R A P+ PP VVR
Sbjct: 2 ADSGEPPPPLCPLCGHPAASYTSSSSSSPSPSQPTARPPLKRKAPPEAPPAVVR 55
>10_01_0183 + 2056891-2056947,2059136-2060089
Length = 336
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 388 LCGAPVVQICSAVQNQDFTVVEDYITGLKALLYLRSR 498
LCG P+ V+ + F V ++Y+ + +L RSR
Sbjct: 205 LCGLPLAHAVELVRRRKFAVTDEYMRSMLDMLARRSR 241
>06_03_0996 + 26731442-26732121,26732573-26732772,26732930-26733330
Length = 426
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 345 HRRYRLC*FGTTVHLVWCTGRTDLQCSAKSRFH 443
HRR+++C + +V +G+ C SRFH
Sbjct: 197 HRRHKVCEYHAKASVVAASGKQQRFCQQCSRFH 229
>02_01_0574 + 4247469-4248196,4249501-4249691,4250565-4251022
Length = 458
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +3
Query: 345 HRRYRLC*FGTTVHLVWCTGRTDLQCSAKSRFH 443
HRR+++C F V G+ C SRFH
Sbjct: 213 HRRHKVCDFHAKAAAVLAAGKQQRFCQQCSRFH 245
>01_01_0118 - 871481-872606,872795-872950,873051-873817
Length = 682
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -2
Query: 369 ISRVDTSDAQYWESR*FISD-RRDCPQSDWTSRVPRY 262
++ +D SD+ +W ISD R +CP W R+P Y
Sbjct: 90 VTGIDYSDSTFWVVDANISDSRNNCPLPRW-KRIPYY 125
>11_05_0065 +
18766566-18766576,18767023-18767083,18767170-18767268,
18767346-18767467,18767577-18767673,18767778-18767824,
18768020-18768203,18768349-18768400,18768795-18768985,
18769072-18770020,18770866-18771022,18771134-18771206,
18771292-18771465,18771880-18771993,18772110-18772236,
18772331-18772443,18772614-18772729,18772847-18773000
Length = 946
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -1
Query: 349 RCPVLGIPVIYFRPQRLPAIRLDESRSPIRRRKLCVFVY 233
+C V+G+ + + + +L AIR+ +R +L V VY
Sbjct: 669 KCAVVGVQIFFSKILKLAAIRIRNLCERLRHEELTVSVY 707
>06_01_0857 + 6502039-6502530
Length = 163
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -2
Query: 270 PRYAAVSCAFLFTDGRPRCCVRFNR 196
PRYA SCA F P CC R+ R
Sbjct: 12 PRYAYQSCA--FKAATPSCCHRYRR 34
>01_01_0879 +
6896587-6896701,6896819-6897005,6897475-6897774,
6897877-6898133,6898596-6898825,6899122-6899247,
6900195-6900374,6901079-6901216,6901515-6901670,
6902409-6902699,6902923-6903162
Length = 739
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/29 (37%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = -3
Query: 368 SAESIPPMPSIGNPGNLFPT-AETARNPI 285
S+ S+PP+PS+G+ G ++ T A+ + P+
Sbjct: 28 SSRSLPPLPSLGSAGFVYSTVADESTAPV 56
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,276,157
Number of Sequences: 37544
Number of extensions: 451596
Number of successful extensions: 1266
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1265
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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