Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0433
(700 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54090| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.5e-05) 74 1e-13
SB_46609| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.68
SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71) 31 0.90
SB_31775| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_54605| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_45947| Best HMM Match : CENP-B_N (HMM E-Value=1.6) 28 6.3
SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_20423| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_51942| Best HMM Match : 7tm_1 (HMM E-Value=0.059) 28 8.4
SB_33814| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_54090| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.5e-05)
Length = 700
Score = 74.1 bits (174), Expect = 1e-13
Identities = 35/48 (72%), Positives = 38/48 (79%)
Frame = +1
Query: 4 GMGLACGQDPVLVKGISQWVRKAIKIPFFVKLTPNITDIVSIAVAAYE 147
GMGLACGQD LV+ I +WVR AI IPFF KLTPN+TDIV IA AA E
Sbjct: 652 GMGLACGQDAELVRNICRWVRAAITIPFFAKLTPNVTDIVVIARAAKE 699
>SB_46609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 365
Score = 31.5 bits (68), Expect = 0.68
Identities = 22/68 (32%), Positives = 31/68 (45%)
Frame = -2
Query: 543 VLKSRWRLSRPSV*ATRT*IQKSFKSCYVIFDHCEILILHCTANLYDRCTTQDEL*CRIS 364
VLKS W L + + + KS + ++ + L+L T LY RC D + C S
Sbjct: 35 VLKSHWWLVMKKIFEEKAYVIKSLECVKGLWYYLLSLLLQSTTKLYRRCVINDSVSC--S 92
Query: 363 RVDTSDAQ 340
R S AQ
Sbjct: 93 RTCQSLAQ 100
>SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71)
Length = 1139
Score = 31.1 bits (67), Expect = 0.90
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -3
Query: 383 NCSAESAESIPPMPSIGNPGNLFPTAETAR-NPIGRVAFPDTP 258
+C S S+P + S +P N + T++T R N I RV D+P
Sbjct: 629 SCDHPSTSSVPHVGSNDDPDNSYSTSQTKRSNKIERVRSQDSP 671
>SB_31775| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 551
Score = 28.7 bits (61), Expect = 4.8
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Frame = +1
Query: 106 NITDIVSIAVAAY--EGGANGVSAINTVSGLMSVKADATPWPAVGKQKRTTYG---GVSG 270
++TD S+ V A E + G+SA T S + VKA T ++G TT G+S
Sbjct: 51 SLTDNASLGVKASTTESVSLGISASTTESASLGVKASTTESASLGISASTTESVSLGISA 110
Query: 271 NATRPIGL 294
+ T L
Sbjct: 111 STTESASL 118
>SB_54605| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 911
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -3
Query: 440 KS*FCTALQICTTGAPHKMNCSAESAESIPP 348
K+ FC +C G P K NC+ + + + P
Sbjct: 179 KASFCLEDTVCDAGIPKKWNCTGGADQGVSP 209
>SB_45947| Best HMM Match : CENP-B_N (HMM E-Value=1.6)
Length = 248
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/57 (26%), Positives = 24/57 (42%)
Frame = -3
Query: 524 DCPVHPSRPRERRYKRALSPVM*SSTTVKS*FCTALQICTTGAPHKMNCSAESAESI 354
+C +H R R+RR + + + + +CT ICT P + E E I
Sbjct: 8 ECALHAERHRDRRVSYSSRGLHNLLSECEMQYCTVRAICTVAMPPRNRIPFEHRERI 64
>SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 593
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +1
Query: 109 ITDIVSIAVAAYEGGANGVSAINTVSGLMSVKADA-TPWPAVGKQKRTTYGGVSGNATRP 285
ITD+ I + + G NG+ +N + M+ + + +G G ++GN
Sbjct: 344 ITDMNGINMNGFNGIPNGIGTVNAIPNSMAAQMNGIAGMNGIGNGMGNGIGIMNGNMN-- 401
Query: 286 IGLRAVSAVGN 318
G+ +SA+ N
Sbjct: 402 -GMAGISALAN 411
>SB_20423| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 342
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 382 FILCGAPVVQICSAVQNQDFTVVEDYITGLKALLYLRS 495
FI C AP VQ ++ + D +TG+K L Y+ S
Sbjct: 223 FIACWAPFFLANLIVQYENVKISPDTVTGIKFLHYVSS 260
>SB_51942| Best HMM Match : 7tm_1 (HMM E-Value=0.059)
Length = 408
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/47 (31%), Positives = 18/47 (38%)
Frame = -2
Query: 249 CAFLFTDGRPRCCVRFNRH*SRYCVYGRNTVRTTFISSHSDTDNVRN 109
CA T PRCC + H Y G N V T S+ N +
Sbjct: 225 CASCNTCAHPRCCRQNRAHNQLYARTGANQVPTVICYSNEIATNAES 271
>SB_33814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 282
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +1
Query: 109 ITDIVSIAVAAYEGGANGVSAINTVSGLMSVKADA-TPWPAVGKQKRTTYGGVSGNATRP 285
ITD+ I + + G NG+ +N + M+ + + +G G ++GN
Sbjct: 33 ITDMNGINMNGFNGIPNGIGTVNAIPNSMAAQMNGIAGMNGIGNGMGNGIGIMNGNMN-- 90
Query: 286 IGLRAVSAVGN 318
G+ +SA+ N
Sbjct: 91 -GMAGISALAN 100
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,787,373
Number of Sequences: 59808
Number of extensions: 546339
Number of successful extensions: 1473
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1467
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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