Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0433
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39742-6|AAK39195.2| 1059|Caenorhabditis elegans Hypothetical pr...   247   5e-66
Z46266-5|CAA86412.1|  375|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AF100656-5|AAF99963.2|  259|Caenorhabditis elegans Hypothetical ...    29   3.2  
AC098856-8|ABO52819.1|  384|Caenorhabditis elegans Hypothetical ...    29   3.2  
Z92830-7|CAB07360.1|  659|Caenorhabditis elegans Hypothetical pr...    28   5.6  
U80448-9|AAB37822.2|  577|Caenorhabditis elegans Hypothetical pr...    28   5.6  
U80444-3|AAB37789.1|  326|Caenorhabditis elegans Serpentine rece...    28   7.4  
AF039050-11|AAC47941.1|  333|Caenorhabditis elegans Seven tm rec...    28   7.4  
AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily a...    27   9.8  
AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily a...    27   9.8  

>U39742-6|AAK39195.2| 1059|Caenorhabditis elegans Hypothetical protein
            C25F6.3 protein.
          Length = 1059

 Score =  247 bits (605), Expect = 5e-66
 Identities = 121/225 (53%), Positives = 155/225 (68%), Gaps = 1/225 (0%)
 Frame = +1

Query: 4    GMGLACGQDPVLVKGISQWVRKAIKIPFFVKLTPNITDIVSIAVAAYEGGANGVSAINTV 183
            GMGLACGQ P +VK I +WVR  +KIPFF K+TPNITD+  IA AA +GGA+GV+A NTV
Sbjct: 693  GMGLACGQSPEIVKEICRWVRACVKIPFFPKMTPNITDVREIARAARDGGASGVTATNTV 752

Query: 184  SGLMSVKADATPWPAVGKQKRTTYGGVSGNATRPIGLRAVSAVGNKXXXXXXXXXXXXDS 363
            S LM +KAD   WPA+G  KRTTYGG+SG+A RPI ++AVS++ N+            +S
Sbjct: 753  SSLMHMKADGNAWPAIGSTKRTTYGGMSGSAIRPIAMKAVSSIANELDGFPIMATGGIES 812

Query: 364  ADSALQFILCGAPVVQICSAVQNQDFTVVEDYITGLKALLYLR-SRGLDGWTGQSPPTFK 540
            A++ L F++ GA V+Q+CSAVQNQDFTVV+DY TGLKALLYL  +  L  W GQSPP  K
Sbjct: 813  AETGLGFLMAGASVLQVCSAVQNQDFTVVDDYCTGLKALLYLSGAESLKNWDGQSPPIEK 872

Query: 541  HQKGKPVQTIRDENGKVLTHFGIYNKKREQILHQNRLKLGLLDDD 675
            HQKGKP+     +  K +  FG Y  +RE++      +  LLD +
Sbjct: 873  HQKGKPILL---QGQKKMPFFGKYRDEREKLEAIKLSESNLLDTE 914


>Z46266-5|CAA86412.1|  375|Caenorhabditis elegans Hypothetical
           protein C07B5.5 protein.
          Length = 375

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
 Frame = +1

Query: 49  ISQWVRKAIKIPFFVKLTPNITDIVSIAVAAYEGGANGVSAINTVSGLMSVKADAT-PWP 225
           +  W R+  +IP   KLT +  D +SI V     G+    +       M+  AD T PW 
Sbjct: 282 VETW-RRGSEIPLDCKLTYHANDALSIHV-----GSTTAFSYTKDHSKMAHSADMTKPWV 335

Query: 226 AVGKQKRTTYGGVSGNAT 279
            +G   R T   V G  T
Sbjct: 336 CIGDINRMTSQYVRGGGT 353


>AF100656-5|AAF99963.2|  259|Caenorhabditis elegans Hypothetical
           protein F49F1.6 protein.
          Length = 259

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
 Frame = +3

Query: 15  CLWTGSGVSERDFSVGTQSHQDSV----LCEINTKYYGHCQYRCG-CL*RWCERCFCH 173
           C +T  G+  +D +  T ++ D +    +C+ + KY   C Y CG C+    + CF H
Sbjct: 44  CPYT-CGICHQDPNQCTDTNLDCLKFDSMCKTDVKYQKQCPYTCGTCVPATPDSCFDH 100


>AC098856-8|ABO52819.1|  384|Caenorhabditis elegans Hypothetical
           protein Y37F4.6 protein.
          Length = 384

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -1

Query: 694 NDCXQHSRRPVNLILIY-FDGESVRVFCCKYR 602
           +DC    + P ++ + Y FD ESV++FCC  R
Sbjct: 63  DDCPHSFQDPQDMRIHYMFDHESVKLFCCGNR 94


>Z92830-7|CAB07360.1|  659|Caenorhabditis elegans Hypothetical
           protein F11A5.8 protein.
          Length = 659

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
 Frame = +1

Query: 478 LLYLRSRGLDGWTGQSPPTFKHQKGKPVQTIRDENGKVLTHFGIYNKKREQILH------ 639
           LL +   G   W+ ++   +K    + ++ I DEN K+L     Y  ++EQ L       
Sbjct: 353 LLLIGLNGCVQWSTRNHELWKPVYSQNIRKIVDENSKLLPFILAYEPRKEQCLENLEADV 412

Query: 640 QNRLKLGLLDDDC 678
           Q+  K GL+ + C
Sbjct: 413 QDLRKTGLIFNYC 425


>U80448-9|AAB37822.2|  577|Caenorhabditis elegans Hypothetical
           protein F59A3.8 protein.
          Length = 577

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 329 DSQYWASEVSTLLIRHYSSSCVVHRSYRFAVQCKIKISQW 448
           DS +W  ++  L   HY  +  VH++  F +   I +S+W
Sbjct: 264 DSVHWLVKLKDLF-SHYQGTSAVHKNGEFQLLNPISLSKW 302


>U80444-3|AAB37789.1|  326|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 14 protein.
          Length = 326

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -2

Query: 645 ILMENLFA-FFVVNTEVCQYLSIFVTNCLYGFSFLVL 538
           ++ E LFA FF+  T +C  L+ +  + L GF  ++L
Sbjct: 82  LITEGLFARFFIYFTPICPVLADYFQSPLVGFKIIML 118


>AF039050-11|AAC47941.1|  333|Caenorhabditis elegans Seven tm
           receptor protein 83 protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = -2

Query: 612 VNTEVCQYLSIFVTNCLYGFSFLVLKSRWRLSRPSV*ATRT*IQKSFKSCYVIFDHCEIL 433
           +N  + QYL +  ++    F+ ++L    +LSRP   + +  +     S YV +   EIL
Sbjct: 3   LNLNLSQYLELIGSSLFLFFNMIMLIIIQKLSRPEYGSYKI-LMMVMTSLYVAYSAIEIL 61

Query: 432 IL 427
           +L
Sbjct: 62  VL 63


>AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform b protein.
          Length = 774

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +1

Query: 100 TPNITDIVSIAVAAYEGGANGVSAINTVSGLMSVKADATPWPAVGKQKRTTYGGVSGNAT 279
           T N T + S +    + G      ++    L  V A ++P  +  ++ R  Y G SGN+ 
Sbjct: 251 THNSTRVYSHSPTRSQVGVRDAHRLSR-DDLRVVDAQSSPADSQSEELRRMYSGRSGNSV 309

Query: 280 RPIG 291
           +P G
Sbjct: 310 KPTG 313


>AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform a protein.
          Length = 996

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +1

Query: 100 TPNITDIVSIAVAAYEGGANGVSAINTVSGLMSVKADATPWPAVGKQKRTTYGGVSGNAT 279
           T N T + S +    + G      ++    L  V A ++P  +  ++ R  Y G SGN+ 
Sbjct: 473 THNSTRVYSHSPTRSQVGVRDAHRLSR-DDLRVVDAQSSPADSQSEELRRMYSGRSGNSV 531

Query: 280 RPIG 291
           +P G
Sbjct: 532 KPTG 535


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,272,286
Number of Sequences: 27780
Number of extensions: 391085
Number of successful extensions: 1119
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)