Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0433
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    26   0.30 
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    26   0.30 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   1.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.8  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   2.8  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +3

Query: 321 ITGIPNTGHRRYRLC*FGTTVHLVWCTGRTD 413
           +TG+   GHR  R C FG TV+L   T RT+
Sbjct: 520 VTGV--IGHRMPRYCLFGNTVNL---TSRTE 545


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +3

Query: 321 ITGIPNTGHRRYRLC*FGTTVHLVWCTGRTD 413
           +TG+   GHR  R C FG TV+L   T RT+
Sbjct: 520 VTGV--IGHRMPRYCLFGNTVNL---TSRTE 545


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 640 DGESVRVFCCK 608
           DGE+ + FCCK
Sbjct: 450 DGETTKTFCCK 460


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +1

Query: 415 CSAVQNQDFTVVEDYITGLKALLYLRSRGLDGWTGQSPPTFKHQKGKPVQTIRDENGKV 591
           C+ +   D  V+    +   AL YL+    D W G+S   + H K K     + +NG V
Sbjct: 165 CAVISMHDGLVLYTTPSICTALGYLK----DAWIGRSFIDYVHPKDKATLADQIKNGIV 219


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = -3

Query: 407 TTGAPHKMNCSAESAESIPPMPSIGNPGNLFPTAETARNPIGR 279
           + GAP     +  +   +PP+P++       PT  +   PI R
Sbjct: 412 SAGAPMPPIPNMSNMSGMPPLPNMPGSMPTMPTMPSMAGPIRR 454



 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 353 PPMPSIGNPGNLFPTAETARNP 288
           PP PS G P    P A  ++NP
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNP 60


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +1

Query: 415 CSAVQNQDFTVVEDYITGLKALLYLRSRGLDGWTGQSPPTFKHQKGKPVQTIRDENGKV 591
           C+ +   D  V+    +   AL YL+    D W G+S   + H K K     + +NG V
Sbjct: 160 CAVISMHDGLVLYTTPSICTALGYLK----DAWIGRSFIDYVHPKDKATLADQIKNGIV 214


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,607
Number of Sequences: 438
Number of extensions: 5103
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)