Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0433
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17810.1 68416.m02271 dihydroorotate dehydrogenase family pro...    79   4e-15
At2g43800.1 68415.m05445 formin homology 2 domain-containing pro...    29   3.0  
At5g46450.1 68418.m05721 disease resistance protein (TIR-NBS-LRR...    29   3.9  
At5g42170.1 68418.m05133 family II extracellular lipase, putativ...    28   5.2  
At4g22940.1 68417.m03312 protein kinase family protein contains ...    28   5.2  
At4g28485.1 68417.m04075 hypothetical protein contains Pfam prof...    28   6.8  
At1g55110.1 68414.m06294 zinc finger (C2H2 type) family protein ...    28   6.8  
At1g20570.1 68414.m02565 tubulin family protein                        28   6.8  
At1g02065.1 68414.m00128 squamosa promoter-binding protein-like ...    28   6.8  
At3g26540.1 68416.m03313 pentatricopeptide (PPR) repeat-containi...    27   9.0  

>At3g17810.1 68416.m02271 dihydroorotate dehydrogenase family
           protein / dihydroorotate oxidase family protein low
           similarity to SP|Q12882 Dihydropyrimidine dehydrogenase
           [NADP+] precursor (EC 1.3.1.2) (DPD) (DHPDHase)
           (Dihydrouracil dehydrogenase) (Dihydrothymine
           dehydrogenase) {Homo sapiens}; contains Pfam profile
           PF01180: Dihydroorotate dehydrogenase
          Length = 426

 Score = 78.6 bits (185), Expect = 4e-15
 Identities = 50/162 (30%), Positives = 74/162 (45%), Gaps = 6/162 (3%)
 Frame = +1

Query: 7   MGLACGQDPVLVKGISQWVRKAIKIPFFVKLTPNITDIVSIAVAAYEGGANGVSAINTVS 186
           MG A GQD  L+  +  W+     +P + K+TPNITDI   A  + + G  G++AINT+ 
Sbjct: 200 MGAAVGQDCALLDEVCGWINAKATVPVWAKMTPNITDITEPARVSLKSGCEGIAAINTIM 259

Query: 187 GLMSVKADA-TPWPAVGKQKRTTYGGVSGNATRPIGLRAVSAVGNK-----XXXXXXXXX 348
            +M +      P P V  +  +T GG S  A RPI L  V  +                 
Sbjct: 260 SVMGIDMKTLRPEPCV--EGYSTPGGYSYKAVRPIALAKVMNIAKMMKSEFSEDRSLSGI 317

Query: 349 XXXDSADSALQFILCGAPVVQICSAVQNQDFTVVEDYITGLK 474
              ++   A +FIL G+  VQ+C+ V    +  V+     LK
Sbjct: 318 GGVETGYDAAEFILLGSNTVQVCTGVMMHGYGHVKTLCAELK 359


>At2g43800.1 68415.m05445 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 894

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
 Frame = -3

Query: 407 TTGAPHKMNCSAESAESIPPMPSIGNPGNLFPTAE---TARNPIGRVAFPDTPP*VVRFC 237
           TT  PH+ +  +  A   PP PS  +P   FP+++   TA +P      P  PP      
Sbjct: 71  TTPPPHEKHLFSSVANPPPPPPSPPHPNPFFPSSDPTSTASHP------PPAPP--PPAS 122

Query: 236 LPTAGQGVASAL 201
           LPT    ++S L
Sbjct: 123 LPTFPANISSLL 134


>At5g46450.1 68418.m05721 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1123

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +1

Query: 466 GLKAL-LYLRSRGLDGWTGQSPPTFKHQKGKPVQTIRDENGKVLTHFGIYNKKREQI 633
           GLK L  YLR R ++ W    P       GK  +T+R      +++ G+ NKK E I
Sbjct: 388 GLKVLGSYLRGRDIEDWMDMMPRLQNDLDGKIEKTLR------VSYDGLNNKKDEAI 438


>At5g42170.1 68418.m05133 family II extracellular lipase, putative
           similar to family II lipase EXL3 [Arabidopsis thaliana]
           GI:15054386; contains InterPro Entry IPR001087 Lipolytic
           enzyme, G-D-S-L family
          Length = 319

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = -2

Query: 582 IFVTNCLYGFSFLVLKSRWRLSRPSV*ATRT*IQKSFKSCYVIFDHCEIL 433
           + +  CL+G  FL+  SR+RL +  V A    ++ ++  C +I+   E L
Sbjct: 6   LIILLCLHGSLFLMALSRYRLCQVMVIAFVLHVETTYGFCLIIYMAAERL 55


>At4g22940.1 68417.m03312 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 458

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 596 VSTFPFSSRIVCTGFPFWCLKVGGDCPVHPSRPRERRYKR 477
           V+  P SS +  +G+P W + V G+  V  +  RE  +++
Sbjct: 66  VNVHPRSSELAASGWPPWLISVAGEALVGWTPGRESHFEK 105


>At4g28485.1 68417.m04075 hypothetical protein contains Pfam profile
           PF05078: Protein of unknown function (DUF679)
          Length = 165

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 398 APHKMNCSAESAESIPPMPSIGNPGNLFPTA 306
           AP K     E   S+PP P  G+P +  P A
Sbjct: 15  APRKPKSKVERVVSVPPSPVAGSPASSSPYA 45


>At1g55110.1 68414.m06294 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 455

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -3

Query: 350 PMPSIGNPGNLFPTAETARNPIGRVAFPDTPP 255
           P P+ GN GNLFP   ++ N  GR +FP   P
Sbjct: 291 PNPN-GNNGNLFPPVASSVN-TGRSSFPHPSP 320


>At1g20570.1 68414.m02565 tubulin family protein
          Length = 976

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/57 (22%), Positives = 30/57 (52%)
 Frame = +2

Query: 200 LKRTQHLGLPSVNKNAQLTAAYRGTRLVQSDCGQSLRSEINYRDSQYWASEVSTLLI 370
           L  +++  LPS+N  + L+A + G+ +     G + +    +  S+Y +S+  T ++
Sbjct: 514 LNLSENYCLPSLNDKSLLSAVFEGSGVAPKFVGTNYKYGFQFGRSEYLSSQDDTKIL 570


>At1g02065.1 68414.m00128 squamosa promoter-binding protein-like 8
           (SPL8) identical to squamosa promoter binding
           protein-like 8 [Arabidopsis thaliana] GI:5931679;
           contains Pfam profile PF03110: SBP domain
          Length = 333

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 345 HRRYRLC*FGTTVHLVWCTGRTDLQCSAKSRFH 443
           HRR+++C F +    V   G +   C   SRFH
Sbjct: 204 HRRHKVCEFHSKASTVVAAGLSQRFCQQCSRFH 236


>At3g26540.1 68416.m03313 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 PPR repeat
          Length = 700

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -2

Query: 576 VTNCLY-GFSFLVLKSRWRLSRPSV*ATRT*IQKSFKSCYVIFDHCEILILHCTANLY 406
           +T C   G S  V +   R++R  V AT T      KSC +I D   +  LHC    Y
Sbjct: 134 ITACAQNGVSDEVFRMFRRMNRDGVRATETSFAGVLKSCGLILDLRLLRQLHCAVVKY 191


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,237,940
Number of Sequences: 28952
Number of extensions: 359945
Number of successful extensions: 1005
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)