Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0432
         (625 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)          95   3e-20
SB_8022| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.3  
SB_44946| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_34916| Best HMM Match : adh_short (HMM E-Value=4.8e-06)             28   5.4  
SB_56787| Best HMM Match : Keratin_B2 (HMM E-Value=0.34)               27   9.4  

>SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)
          Length = 92

 Score = 95.5 bits (227), Expect = 3e-20
 Identities = 51/110 (46%), Positives = 65/110 (59%)
 Frame = +2

Query: 191 TGKVKVPXHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKR 370
           +G +K+P  +DLVKT +FKELAPYDPDW+Y+R                        GRK 
Sbjct: 2   SGNLKIPDWVDLVKTGKFKELAPYDPDWYYIRA-----------------------GRKN 38

Query: 371 NGVTPSHFCRSSGSIARXALQSLEALKLVEKVQDGGRILTTQXRRDLDRI 520
            G  PSHF   S S+AR  L+ LE +KLVEK   GGR +T+Q +RD+DRI
Sbjct: 39  RGSAPSHFEVGSASVARSVLKGLEQIKLVEKASTGGRNITSQGQRDMDRI 88


>SB_8022| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
 Frame = +2

Query: 131 TVKDVEQDKIVKTVAAHLKKTGKVKVPXHMD-LVKTARFKELAPYDPDWFYVRCAAILRH 307
           TV  V   K  KT          ++VP  ++ L  T R  E+  +   W  V+C      
Sbjct: 221 TVNKVTGRKYTKTFVIMSGSNRPMRVPHSLEPLTLTNRVAEVT-FCRSWNAVKCTKYCAL 279

Query: 308 IYIRSPVGVKTVTKIFG 358
           IY+ S +  + V K+ G
Sbjct: 280 IYLHSRLDTQPVNKVIG 296


>SB_44946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = +2

Query: 269 DWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARXALQSLEAL 448
           D +YVR A +     I +  G   + +I   R+R  VTPS    S G      L  L+ +
Sbjct: 57  DQWYVRDACVSPSENISTNYGSPKLPRIVETRQRGDVTPSPLVLSRGISRERLLTKLDRM 116

Query: 449 KL 454
           +L
Sbjct: 117 QL 118


>SB_34916| Best HMM Match : adh_short (HMM E-Value=4.8e-06)
          Length = 251

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 158 IVKTVAAHLKKTGKVKVPXHMDLVKTAR-FKELAPYDPD 271
           + K+++  LKK G + V  +   VKT + FK+ AP  P+
Sbjct: 182 VTKSLSVDLKKDGILAVAVNPGFVKTRKEFKDAAPLTPE 220


>SB_56787| Best HMM Match : Keratin_B2 (HMM E-Value=0.34)
          Length = 527

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -2

Query: 165 LTILSCSTSFTVTERIFSLHLAEVNCYFTVTKVLL*RYIPVYLMNNHV 22
           +T+ +C    TVT+ +   H+    C+  +T      +IPV   +NH+
Sbjct: 467 ITVTTCHNHITVTKCLN--HITVTTCHNHITVTTCHDHIPVTTCHNHI 512


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,571,894
Number of Sequences: 59808
Number of extensions: 318137
Number of successful extensions: 680
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)