Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0432
         (625 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118868-1|AAM50728.1|  156|Drosophila melanogaster GM26647p pro...   198   7e-51
AF216206-1|AAF65682.1|  156|Drosophila melanogaster ribosomal pr...   198   7e-51
AE014298-2436|AAN09413.1|  156|Drosophila melanogaster CG4464-PC...   198   7e-51
AE014298-2435|AAN09412.1|  156|Drosophila melanogaster CG4464-PB...   198   7e-51
AE014298-2434|AAF48633.1|  156|Drosophila melanogaster CG4464-PA...   198   7e-51
X73153-1|CAA51677.1|  156|Drosophila melanogaster ribosomal prot...   197   9e-51
AY119257-1|AAM51117.1|  155|Drosophila melanogaster SD22440p pro...   163   1e-40
AE014297-3411|AAN13960.1|  155|Drosophila melanogaster CG5338-PB...   163   1e-40

>AY118868-1|AAM50728.1|  156|Drosophila melanogaster GM26647p
           protein.
          Length = 156

 Score =  198 bits (482), Expect = 7e-51
 Identities = 91/134 (67%), Positives = 109/134 (81%)
 Frame = +2

Query: 119 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPXHMDLVKTARFKELAPYDPDWFYVRCAAI 298
           M  VTVKD++Q  + K VA  LKKTGK+KVP  MD+VKTA+FKELAPYDPDWFYVRCA+I
Sbjct: 1   MPGVTVKDIDQHAVTKAVAVFLKKTGKLKVPDQMDIVKTAKFKELAPYDPDWFYVRCASI 60

Query: 299 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARXALQSLEALKLVEKVQDGG 478
           LRH+Y RSP GV ++TKI+GGRKRNGV PSHFCR++   AR ALQ+LE  +LVEK  DGG
Sbjct: 61  LRHLYHRSPAGVGSITKIYGGRKRNGVHPSHFCRAADGAARKALQALEHARLVEKHPDGG 120

Query: 479 RILTTQXRRDLDRI 520
           R L++  +RDLDRI
Sbjct: 121 RKLSSIGQRDLDRI 134


>AF216206-1|AAF65682.1|  156|Drosophila melanogaster ribosomal
           protein S19 protein.
          Length = 156

 Score =  198 bits (482), Expect = 7e-51
 Identities = 91/134 (67%), Positives = 109/134 (81%)
 Frame = +2

Query: 119 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPXHMDLVKTARFKELAPYDPDWFYVRCAAI 298
           M  VTVKD++Q  + K VA  LKKTGK+KVP  MD+VKTA+FKELAPYDPDWFYVRCA+I
Sbjct: 1   MPGVTVKDIDQHAVTKAVAVFLKKTGKLKVPDQMDIVKTAKFKELAPYDPDWFYVRCASI 60

Query: 299 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARXALQSLEALKLVEKVQDGG 478
           LRH+Y RSP GV ++TKI+GGRKRNGV PSHFCR++   AR ALQ+LE  +LVEK  DGG
Sbjct: 61  LRHLYHRSPAGVGSITKIYGGRKRNGVHPSHFCRAADGAARKALQALEHARLVEKHPDGG 120

Query: 479 RILTTQXRRDLDRI 520
           R L++  +RDLDRI
Sbjct: 121 RKLSSIGQRDLDRI 134


>AE014298-2436|AAN09413.1|  156|Drosophila melanogaster CG4464-PC,
           isoform C protein.
          Length = 156

 Score =  198 bits (482), Expect = 7e-51
 Identities = 91/134 (67%), Positives = 109/134 (81%)
 Frame = +2

Query: 119 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPXHMDLVKTARFKELAPYDPDWFYVRCAAI 298
           M  VTVKD++Q  + K VA  LKKTGK+KVP  MD+VKTA+FKELAPYDPDWFYVRCA+I
Sbjct: 1   MPGVTVKDIDQHAVTKAVAVFLKKTGKLKVPDQMDIVKTAKFKELAPYDPDWFYVRCASI 60

Query: 299 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARXALQSLEALKLVEKVQDGG 478
           LRH+Y RSP GV ++TKI+GGRKRNGV PSHFCR++   AR ALQ+LE  +LVEK  DGG
Sbjct: 61  LRHLYHRSPAGVGSITKIYGGRKRNGVHPSHFCRAADGAARKALQALEHARLVEKHPDGG 120

Query: 479 RILTTQXRRDLDRI 520
           R L++  +RDLDRI
Sbjct: 121 RKLSSIGQRDLDRI 134


>AE014298-2435|AAN09412.1|  156|Drosophila melanogaster CG4464-PB,
           isoform B protein.
          Length = 156

 Score =  198 bits (482), Expect = 7e-51
 Identities = 91/134 (67%), Positives = 109/134 (81%)
 Frame = +2

Query: 119 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPXHMDLVKTARFKELAPYDPDWFYVRCAAI 298
           M  VTVKD++Q  + K VA  LKKTGK+KVP  MD+VKTA+FKELAPYDPDWFYVRCA+I
Sbjct: 1   MPGVTVKDIDQHAVTKAVAVFLKKTGKLKVPDQMDIVKTAKFKELAPYDPDWFYVRCASI 60

Query: 299 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARXALQSLEALKLVEKVQDGG 478
           LRH+Y RSP GV ++TKI+GGRKRNGV PSHFCR++   AR ALQ+LE  +LVEK  DGG
Sbjct: 61  LRHLYHRSPAGVGSITKIYGGRKRNGVHPSHFCRAADGAARKALQALEHARLVEKHPDGG 120

Query: 479 RILTTQXRRDLDRI 520
           R L++  +RDLDRI
Sbjct: 121 RKLSSIGQRDLDRI 134


>AE014298-2434|AAF48633.1|  156|Drosophila melanogaster CG4464-PA,
           isoform A protein.
          Length = 156

 Score =  198 bits (482), Expect = 7e-51
 Identities = 91/134 (67%), Positives = 109/134 (81%)
 Frame = +2

Query: 119 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPXHMDLVKTARFKELAPYDPDWFYVRCAAI 298
           M  VTVKD++Q  + K VA  LKKTGK+KVP  MD+VKTA+FKELAPYDPDWFYVRCA+I
Sbjct: 1   MPGVTVKDIDQHAVTKAVAVFLKKTGKLKVPDQMDIVKTAKFKELAPYDPDWFYVRCASI 60

Query: 299 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARXALQSLEALKLVEKVQDGG 478
           LRH+Y RSP GV ++TKI+GGRKRNGV PSHFCR++   AR ALQ+LE  +LVEK  DGG
Sbjct: 61  LRHLYHRSPAGVGSITKIYGGRKRNGVHPSHFCRAADGAARKALQALEHARLVEKHPDGG 120

Query: 479 RILTTQXRRDLDRI 520
           R L++  +RDLDRI
Sbjct: 121 RKLSSIGQRDLDRI 134


>X73153-1|CAA51677.1|  156|Drosophila melanogaster ribosomal protein
           S19 protein.
          Length = 156

 Score =  197 bits (481), Expect = 9e-51
 Identities = 90/134 (67%), Positives = 109/134 (81%)
 Frame = +2

Query: 119 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPXHMDLVKTARFKELAPYDPDWFYVRCAAI 298
           M  VTVKD++Q  + K VA  LKKTGK+KVP  MD++KTA+FKELAPYDPDWFYVRCA+I
Sbjct: 1   MPGVTVKDIDQHAVTKAVAVFLKKTGKLKVPDQMDIIKTAKFKELAPYDPDWFYVRCASI 60

Query: 299 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARXALQSLEALKLVEKVQDGG 478
           LRH+Y RSP GV ++TKI+GGRKRNGV PSHFCR++   AR ALQ+LE  +LVEK  DGG
Sbjct: 61  LRHLYHRSPAGVGSITKIYGGRKRNGVHPSHFCRAADGAARKALQALEHARLVEKHPDGG 120

Query: 479 RILTTQXRRDLDRI 520
           R L++  +RDLDRI
Sbjct: 121 RKLSSIGQRDLDRI 134


>AY119257-1|AAM51117.1|  155|Drosophila melanogaster SD22440p
           protein.
          Length = 155

 Score =  163 bits (397), Expect = 1e-40
 Identities = 76/134 (56%), Positives = 96/134 (71%)
 Frame = +2

Query: 119 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPXHMDLVKTARFKELAPYDPDWFYVRCAAI 298
           M  VTVK+++Q  + K +AA LKK+GK+ VP     +KT +FKE AP D DWFY RCA+I
Sbjct: 1   MPGVTVKEIDQHVLTKNMAAFLKKSGKIFVPEQAVYMKTGKFKETAPTDDDWFYTRCASI 60

Query: 299 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARXALQSLEALKLVEKVQDGG 478
           +RH+Y+RSP GV   TK++ GRKRNGV PS  CRSS    R ALQ+LEA  +VE+  DGG
Sbjct: 61  MRHLYLRSPAGVGAFTKVYSGRKRNGVRPSKHCRSSDGCIRKALQALEAANMVERHPDGG 120

Query: 479 RILTTQXRRDLDRI 520
           R LT Q +R+LDRI
Sbjct: 121 RKLTPQGQRNLDRI 134


>AE014297-3411|AAN13960.1|  155|Drosophila melanogaster CG5338-PB
           protein.
          Length = 155

 Score =  163 bits (397), Expect = 1e-40
 Identities = 76/134 (56%), Positives = 96/134 (71%)
 Frame = +2

Query: 119 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPXHMDLVKTARFKELAPYDPDWFYVRCAAI 298
           M  VTVK+++Q  + K +AA LKK+GK+ VP     +KT +FKE AP D DWFY RCA+I
Sbjct: 1   MPGVTVKEIDQHVLTKNMAAFLKKSGKIFVPEQAVYMKTGKFKETAPTDDDWFYTRCASI 60

Query: 299 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARXALQSLEALKLVEKVQDGG 478
           +RH+Y+RSP GV   TK++ GRKRNGV PS  CRSS    R ALQ+LEA  +VE+  DGG
Sbjct: 61  MRHLYLRSPAGVGAFTKVYSGRKRNGVRPSKHCRSSDGCIRKALQALEAANMVERHPDGG 120

Query: 479 RILTTQXRRDLDRI 520
           R LT Q +R+LDRI
Sbjct: 121 RKLTPQGQRNLDRI 134


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,634,038
Number of Sequences: 53049
Number of extensions: 458873
Number of successful extensions: 866
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2579793750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)