Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0432
         (625 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical pr...   151   5e-37
AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal pro...   151   5e-37
AC084197-47|AAM44393.2|  377|Caenorhabditis elegans Hypothetical...    29   3.6  

>Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical
           protein T05F1.3 protein.
          Length = 146

 Score =  151 bits (365), Expect = 5e-37
 Identities = 73/134 (54%), Positives = 94/134 (70%), Gaps = 1/134 (0%)
 Frame = +2

Query: 122 RSVTVKDVEQDKIVKTVAAHLKKTGKVKVPXHMDLVKTARFKELAPYDPDWFYVRCAAIL 301
           R+ ++KDV+Q +  K++A  LKK+GKVKVP   DLVK    KELAP DPDWFY R A++ 
Sbjct: 3   RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLA 62

Query: 302 RHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARXALQSLEALKLVEKVQDG-G 478
           RH+Y R P G+    K++GG KR GV P+HF  S+G+  R A+Q LE +K VEK  DG G
Sbjct: 63  RHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKG 121

Query: 479 RILTTQXRRDLDRI 520
           RIL+ Q R+DLDRI
Sbjct: 122 RILSKQGRKDLDRI 135


>AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal
           protein S19 protein.
          Length = 146

 Score =  151 bits (365), Expect = 5e-37
 Identities = 73/134 (54%), Positives = 94/134 (70%), Gaps = 1/134 (0%)
 Frame = +2

Query: 122 RSVTVKDVEQDKIVKTVAAHLKKTGKVKVPXHMDLVKTARFKELAPYDPDWFYVRCAAIL 301
           R+ ++KDV+Q +  K++A  LKK+GKVKVP   DLVK    KELAP DPDWFY R A++ 
Sbjct: 3   RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLA 62

Query: 302 RHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARXALQSLEALKLVEKVQDG-G 478
           RH+Y R P G+    K++GG KR GV P+HF  S+G+  R A+Q LE +K VEK  DG G
Sbjct: 63  RHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKG 121

Query: 479 RILTTQXRRDLDRI 520
           RIL+ Q R+DLDRI
Sbjct: 122 RILSKQGRKDLDRI 135


>AC084197-47|AAM44393.2|  377|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.37 protein.
          Length = 377

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 136 YCDGTHIFTSPCRSKLLF 83
           +CDG H+F  PC  K  F
Sbjct: 234 FCDGLHVFECPCEKKSSF 251


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,286,426
Number of Sequences: 27780
Number of extensions: 239211
Number of successful extensions: 572
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)