Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0432
         (625 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S ...   156   1e-38
At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) simi...   154   4e-38
At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S ...   153   7e-38
At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063...    29   2.5  
At5g45800.1 68418.m05632 leucine-rich repeat transmembrane prote...    29   3.3  

>At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S
           RIBOSOMAL PROTEIN S19 - Oryza sativa,
           SWISSPROT:RS19_ORYSA
          Length = 143

 Score =  156 bits (378), Expect = 1e-38
 Identities = 69/130 (53%), Positives = 92/130 (70%)
 Frame = +2

Query: 131 TVKDVEQDKIVKTVAAHLKKTGKVKVPXHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 310
           TVKDV     VK  A+HLK++GK+++P   D+VKT R KELAPYDPDW+Y+R A++ R I
Sbjct: 6   TVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAASMARKI 65

Query: 311 YIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARXALQSLEALKLVEKVQDGGRILT 490
           Y+R  +GV    +I+GG KRNG  P HFC+SSG IAR  LQ LE + +VE    GGR +T
Sbjct: 66  YLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKGGRRIT 125

Query: 491 TQXRRDLDRI 520
           +  +RDLD++
Sbjct: 126 SSGQRDLDQV 135


>At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) similar
           to 40S ribosomal protein S19 GB:P40978 [Oryza sativa]
          Length = 143

 Score =  154 bits (374), Expect = 4e-38
 Identities = 67/130 (51%), Positives = 92/130 (70%)
 Frame = +2

Query: 131 TVKDVEQDKIVKTVAAHLKKTGKVKVPXHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 310
           TVKDV     VK  A+HLK++GK+++P   D+VKT + KELAPYDPDW+Y+R A++ R +
Sbjct: 6   TVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAASMARKV 65

Query: 311 YIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARXALQSLEALKLVEKVQDGGRILT 490
           Y+R  +GV    +I+GG KRNG  P HFC+SSG IAR  LQ LE + +VE    GGR +T
Sbjct: 66  YLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKGGRRIT 125

Query: 491 TQXRRDLDRI 520
           +  +RDLD++
Sbjct: 126 SSGQRDLDQV 135


>At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S
           ribsomal protein S19, Oryza sativa, SWISSPROT:RS19_ORYSA
          Length = 143

 Score =  153 bits (372), Expect = 7e-38
 Identities = 65/130 (50%), Positives = 93/130 (71%)
 Frame = +2

Query: 131 TVKDVEQDKIVKTVAAHLKKTGKVKVPXHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 310
           TVKDV   + VK  AAHLK++GK+++P   D+VKT + KELAPYDPDW+Y+R A++ R +
Sbjct: 6   TVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAASMARKV 65

Query: 311 YIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARXALQSLEALKLVEKVQDGGRILT 490
           Y+R  +GV    +I+GG KRNG  P HFC+SSG +AR  LQ L+ + +V+    GGR +T
Sbjct: 66  YLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKGGRKIT 125

Query: 491 TQXRRDLDRI 520
           +  +RDLD++
Sbjct: 126 SSGQRDLDQV 135


>At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063:
           Domain of unknown function (DUF383) and  PF04064: Domain
           of unknown function (DUF384)
          Length = 339

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 392 FCRSSGSIARXALQSLEALKL-VEKVQDGGRILTTQXRRDLDRI 520
           FCRSSG  A    + + ++ + + K +DG ++L    RR L +I
Sbjct: 143 FCRSSGETADDQFEHVGSILVNISKTEDGRKLLLEPKRRLLKQI 186


>At5g45800.1 68418.m05632 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 666

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +2

Query: 176 AHLKKTGKVKVPXHMDLVK-TARFKELAPYDPDWFYVRCAAILRHIYIRS 322
           +H   +  V  P   D  + T  F+ ++ ++  WF   C+A++ H+ + S
Sbjct: 15  SHSDSSSTVSCPNGTDFHQLTTVFRYVSGFNSSWFSSNCSAVITHVVLPS 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,460,999
Number of Sequences: 28952
Number of extensions: 213759
Number of successful extensions: 454
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)