Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0431
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    26   0.37 
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    24   1.5  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   8.0  

>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 80  WNSHTTTPNGRRLDALVDDLAFDIVAPLTP 169
           +N H   PNG  + +L+D++++  +AP  P
Sbjct: 512 YNRHLVAPNGDHVISLIDEISY--MAPPAP 539


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = -1

Query: 330 GTESGARPSFITTGRW--SESNSETT 259
           G    ARP  +TT RW  + ++S TT
Sbjct: 40  GRRRAARPGVVTTPRWGCARASSATT 65


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -3

Query: 85  VPPDVFTI*VARQNDRAPHTEQR 17
           +PP+  T   ++QN+++P  +QR
Sbjct: 680 LPPESPTRDKSKQNEKSPSPQQR 702


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,762
Number of Sequences: 336
Number of extensions: 3065
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)