Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0431
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...    26   5.0  
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    25   8.7  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    25   8.7  

>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 574 RLDPCVRXVSYRGKSYSNACPTTRRKV 654
           R+ PC+  V +RG   S+ C  T +++
Sbjct: 11  RMRPCISVVGFRGFHASSPCEATLKEI 37


>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +2

Query: 11  IEALLGMGSSVILAGDLNCKHIRWNSHTTTPNG 109
           +E +   G   IL  D     + WNS T TP G
Sbjct: 223 LEGIGAGGIGRILIADFGFSKVVWNSKTATPCG 255


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = +2

Query: 35  SSVILAGDLNCKHIRWNSHTTTPN--GRRLDALVDDLAFDIVAPLTPTHYPLNIAHRPDI 208
           S ++LAG   C +I W    T+P+   +   +++ +L F     +   H   ++  R  +
Sbjct: 661 SEILLAGIWLCINILWPKQCTSPSQEDKERASILQNLGFGECLQMLQNHSSPDVRER--V 718

Query: 209 LDIALLKNVT 238
            D  +  NVT
Sbjct: 719 KDALMYINVT 728


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,776,904
Number of Sequences: 5004
Number of extensions: 50474
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)