Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0431
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0614 - 35099225-35099461,35099545-35099694,35099919-351000...    29   5.2  
08_01_0867 + 8458570-8459168,8460128-8460313,8462684-8463167           28   6.9  

>03_06_0614 -
           35099225-35099461,35099545-35099694,35099919-35100066,
           35100152-35100231,35100428-35100594,35100692-35100940,
           35101025-35102310,35102423-35102544,35102946-35103272
          Length = 921

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -3

Query: 376 QADAQRVPIHHSPRDGNG-IGSATELHNDGT 287
           Q   + +P+H  PRDG G  G   E H+ GT
Sbjct: 212 QCKEEPLPLHEPPRDGGGSAGEEEEEHDVGT 242


>08_01_0867 + 8458570-8459168,8460128-8460313,8462684-8463167
          Length = 422

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 80  WNSHTTTPNGRRLDALVDD 136
           W SH T   GRRLDA++ D
Sbjct: 395 WTSHMTPEMGRRLDAILRD 413


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,561,274
Number of Sequences: 37544
Number of extensions: 384869
Number of successful extensions: 941
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)