Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0431
(750 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ... 46 2e-06
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript... 43 9e-06
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript... 41 4e-05
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript... 40 1e-04
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript... 38 3e-04
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript... 38 3e-04
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript... 35 0.002
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript... 35 0.002
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript... 33 0.009
M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein. 27 0.47
AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript... 26 1.1
EF519368-1|ABP68477.1| 506|Anopheles gambiae LRIM1 protein. 23 7.6
>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
gambiae RT2 retroposon. ).
Length = 1222
Score = 45.6 bits (103), Expect = 2e-06
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Frame = +2
Query: 41 VILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIVAPLTPTHYPLNIAHRPDILDIA 220
V++AGD N +H W S T G L +V+ L ++ + N P I+D+A
Sbjct: 129 VVVAGDFNARHEEWGSPRTCDRGEELHGMVEQLGLIVINQGREYTFVGNGVALPSIVDVA 188
Query: 221 LLKNVTLRLHS-IEVVSELDSDHRPVVMKLGRAPDS 325
R + + S SDHR V+ +G P S
Sbjct: 189 FASPSIARPDTWVVSTSYTASDHRYVLYTVGGTPPS 224
>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
protein.
Length = 1222
Score = 43.2 bits (97), Expect = 9e-06
Identities = 22/72 (30%), Positives = 35/72 (48%)
Frame = +2
Query: 41 VILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIVAPLTPTHYPLNIAHRPDILDIA 220
V+ AGDLN H W S T G + LVD L +++ T + N RP ++D+A
Sbjct: 116 VVFAGDLNAWHTAWGSCRTNAKGEAVVQLVDSLGLEVLNTGTAPTFLGNGVARPSVVDVA 175
Query: 221 LLKNVTLRLHSI 256
+ +++I
Sbjct: 176 FASSSIAGVNTI 187
>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
protein.
Length = 1099
Score = 41.1 bits (92), Expect = 4e-05
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Frame = +2
Query: 35 SSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIVAPLTPTHYPLNIAHRPDILD 214
S V++AGD N H+ W S + G L + + L ++ T + + N A I+D
Sbjct: 117 SQVVIAGDFNAWHVEWGSERNSEKGEELLSAIQQLDLVVLNQGTTSTFDGNGAATASIVD 176
Query: 215 IALLKNVTLRLHSIEVVSELD-SDHRPVVMKLG 310
+A + + V + SDHR + +G
Sbjct: 177 VAFATPTIAQPGTWNVCGDYSYSDHRYITYTVG 209
>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
protein.
Length = 1154
Score = 39.5 bits (88), Expect = 1e-04
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = +2
Query: 35 SSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIVAPLTPTHYPLNIAHRPDILD 214
S V++AGD N H W S G L +V+ L I+ + + A RP ++D
Sbjct: 116 SHVVIAGDFNAWHTEWGSRRNNLRGEELLQMVEVLGLSILNNGSAPTFIGRGAARPSVID 175
Query: 215 IALLKNVTLRLHSI-EVVSELDSDHR 289
+ +L LH EV+ SDH+
Sbjct: 176 VT-FATPSLVLHDTWEVLDFARSDHQ 200
>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
protein.
Length = 1248
Score = 38.3 bits (85), Expect = 3e-04
Identities = 23/70 (32%), Positives = 34/70 (48%)
Frame = +2
Query: 11 IEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIVAPLTPTHYPLNI 190
I+ L+ V+LAGD N H W S T P G L LV+ L +++ T +
Sbjct: 106 IDILIRGHPRVLLAGDFNAWHTAWGSERTKPKGIALLQLVNGLGLEVLNIGTSHTFRGCG 165
Query: 191 AHRPDILDIA 220
+ RP +D+A
Sbjct: 166 SARPSRIDVA 175
>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
protein.
Length = 1168
Score = 37.9 bits (84), Expect = 3e-04
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = +2
Query: 35 SSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDL 139
S V+LAGD N H+ W S T P G L L D+L
Sbjct: 115 SRVLLAGDFNAMHLDWGSSRTCPKGLELLQLADNL 149
>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
protein.
Length = 1201
Score = 35.1 bits (77), Expect = 0.002
Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 1/108 (0%)
Frame = +2
Query: 11 IEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIV-APLTPTHYPLN 187
IE S V++AGD N H W S G L V+ L I+ PT
Sbjct: 171 IELEAASHSRVVVAGDFNAWHEEWGSGRNGQRGIELLQTVETLGLSILNQGRKPTFIGRG 230
Query: 188 IAHRPDILDIALLKNVTLRLHSIEVVSELDSDHRPVVMKLGRAPDSVP 331
A ++D++ +R + V+ SDH + ++ + PD P
Sbjct: 231 FA-ASSVIDVSFASREIVRPDTWSVIPFSRSDHELIAFEV-KQPDENP 276
>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
protein.
Length = 1173
Score = 35.1 bits (77), Expect = 0.002
Identities = 21/94 (22%), Positives = 36/94 (38%)
Frame = +2
Query: 35 SSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIVAPLTPTHYPLNIAHRPDILD 214
S V++ GD N H W S + G L L+ + ++ + A ++D
Sbjct: 136 SQVVIDGDFNAWHTEWGSARNSQRGEDLLQLIQSVQLQVINSGNEPTFIGRGAATSSVID 195
Query: 215 IALLKNVTLRLHSIEVVSELDSDHRPVVMKLGRA 316
+ R + EV SDH+ + +G A
Sbjct: 196 VCFATPSIARPETWEVHEFARSDHQLITYSVGEA 229
>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
protein.
Length = 1173
Score = 33.1 bits (72), Expect = 0.009
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Frame = +2
Query: 11 IEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIV-APLTPTHYPLN 187
+E + +V+L GD N H W S T G L V+ L ++ T T
Sbjct: 106 VEIEVSAHPNVVLGGDFNAWHEAWGSARTKRKGEELLNTVEQLGLIVLNRGNTSTFTGRG 165
Query: 188 IAHRPDILDIALLKNVTLRLHSIEVV-SELDSDHRPV 295
IA ++D+ +R ++ EV+ S SDHR V
Sbjct: 166 IAGE-SVIDVTFASPSIVRYNTWEVLKSYWYSDHRYV 201
>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
Length = 1212
Score = 27.5 bits (58), Expect = 0.47
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 2/94 (2%)
Frame = +2
Query: 41 VILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIVAPLTPTHYPLNIAHRPDILDIA 220
V++AGD N H W S + G L L ++ + N ++D+
Sbjct: 175 VVVAGDFNAWHEEWGSRRSNERGEVLLEASQQLGLLLMNRGNVATFVGNGVATASVVDVT 234
Query: 221 LLKNVTLRLHSIEVVSELD--SDHRPVVMKLGRA 316
+ ++ S +V D SDHR + +G A
Sbjct: 235 FASS-SIAQPSTWLVRNTDTRSDHRYITYSVGPA 267
>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
protein.
Length = 1049
Score = 26.2 bits (55), Expect = 1.1
Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 2/87 (2%)
Frame = +2
Query: 41 VILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLA-FDIVAPLTPTHYPLNIAHRPDILDI 217
+++AGD N + W S T G DA+++ A + T N R I+DI
Sbjct: 113 LVIAGDFNAWAVEWGSKRTNSRG---DAVLESFARLGVTLGNAGTTPTFNRNKRTSIVDI 169
Query: 218 ALLKNVTLRLHSIEVVSELD-SDHRPV 295
+ V L SDH V
Sbjct: 170 TFCSTTLSERLNWRVSDALTLSDHNVV 196
>EF519368-1|ABP68477.1| 506|Anopheles gambiae LRIM1 protein.
Length = 506
Score = 23.4 bits (48), Expect = 7.6
Identities = 10/26 (38%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = -1
Query: 696 KKSDHLAS-RTSVMRDFTSRCRARIR 622
KK+ +LA+ + +V+RD CR+R++
Sbjct: 144 KKNIYLANNKITVLRDLDEGCRSRVQ 169
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 724,677
Number of Sequences: 2352
Number of extensions: 13827
Number of successful extensions: 40
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 77339358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -