Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0431
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 33 0.16
AF016445-6|AAC69053.1| 250|Caenorhabditis elegans Hypothetical ... 33 0.22
Z81116-13|CAB03300.1| 245|Caenorhabditis elegans Hypothetical p... 31 0.87
AF016445-5|AAC69059.1| 250|Caenorhabditis elegans Hypothetical ... 30 2.0
AF016445-4|AAC69058.1| 312|Caenorhabditis elegans Hypothetical ... 30 2.0
AF016445-8|AAC69052.1| 244|Caenorhabditis elegans Hypothetical ... 29 2.7
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos... 29 4.7
Z81458-4|CAB03824.1| 623|Caenorhabditis elegans Hypothetical pr... 28 8.1
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 33.5 bits (73), Expect = 0.16
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
Frame = +2
Query: 5 SDIEALLGMGSSVILAGDLNCKHIRWNSH-TTTPNGRRLDALVDDLAFDIVAPLTPTHYP 181
+D + S I++GD+N H W+S + GR L L+ DL D++ H
Sbjct: 22 TDFSNIFQTKSKSIISGDVNAHHSAWHSEGSEDTRGRELAELI-DLHPDLIIQNEQVHTR 80
Query: 182 LNI--AHRPDILDIALLKNVTLRLHSIEVVSELDSDHRPVVMKLGRA 316
+ PDI ++ + H + +L SDH P+ +K+ +A
Sbjct: 81 ADTYSISSPDI--TICTADLATKCH-WSTLYKLGSDHIPMKLKINQA 124
>AF016445-6|AAC69053.1| 250|Caenorhabditis elegans Hypothetical
protein T05B4.10 protein.
Length = 250
Score = 33.1 bits (72), Expect = 0.22
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = +2
Query: 11 IEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIVAPLTPT-HYPL- 184
I + L S ++ GDLNC ++ TP L+ D + ++ P T T YP
Sbjct: 9 IVSFLAPDVSAVIGGDLNCTQYNGSAFVWTPAAVACSNLISDASCAVLYPTTDTLGYPAP 68
Query: 185 -NIAHRP 202
N A RP
Sbjct: 69 GNAAGRP 75
>Z81116-13|CAB03300.1| 245|Caenorhabditis elegans Hypothetical
protein T06C12.14 protein.
Length = 245
Score = 31.1 bits (67), Expect = 0.87
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +2
Query: 5 SDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIV--APLTPTHY 178
S I ALL +S ++ GDLNC ++ TP ++ D + ++ AP+ Y
Sbjct: 6 SFILALLAPQASAVIGGDLNCTSYNGSAFVWTPAATACSNVISDSSCAVLYPAPVPADGY 65
Query: 179 P 181
P
Sbjct: 66 P 66
>AF016445-5|AAC69059.1| 250|Caenorhabditis elegans Hypothetical
protein T05B4.9 protein.
Length = 250
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Frame = +2
Query: 11 IEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIVAPLTPT---HYP 181
I + L S ++ GDLNC ++ TP + D + ++ P T T P
Sbjct: 9 IVSFLAPDVSAVIGGDLNCTTFNGSAFVWTPAAVACSNFISDASCAVLYPTTDTLGFPAP 68
Query: 182 LNIAHRP 202
N A RP
Sbjct: 69 GNAAGRP 75
>AF016445-4|AAC69058.1| 312|Caenorhabditis elegans Hypothetical
protein T05B4.8 protein.
Length = 312
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = +2
Query: 17 ALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIVAPLTPT-HYPL--N 187
+L +S ++ GDLNC + TP+ + D + I+ P T T +P N
Sbjct: 73 SLFAPEASAVIGGDLNCTTYNGTAFVWTPSAVACSNTISDASCAILYPTTDTLGFPAAGN 132
Query: 188 IAHRP 202
A RP
Sbjct: 133 AAGRP 137
>AF016445-8|AAC69052.1| 244|Caenorhabditis elegans Hypothetical
protein T05B4.12 protein.
Length = 244
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/49 (28%), Positives = 20/49 (40%)
Frame = +2
Query: 35 SSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIVAPLTPTHYP 181
SS ++ GDLNC S TP + D + ++ T YP
Sbjct: 13 SSAVIGGDLNCTSYNGTSFVYTPAAVACSNAISDASCQVLYAAPDTLYP 61
>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
protein 1 protein.
Length = 1963
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -1
Query: 666 SVMRDFTSRCRARIRIRFSAVGYXSYARIEAFLAXRSSXISSGNLKR 526
+V D +SR IRI F GY S A IE +L +S + +R
Sbjct: 240 TVKNDNSSRFGKFIRINFDMSGYISGANIEFYLLEKSRVLRQAQDER 286
>Z81458-4|CAB03824.1| 623|Caenorhabditis elegans Hypothetical
protein C03E10.5 protein.
Length = 623
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/73 (23%), Positives = 29/73 (39%)
Frame = -1
Query: 369 MPSVCQSTTVLVTGTESGARPSFITTGRWSESNSETTSIECKRRVTFFNNAMSSISGRCA 190
M S +TT + T + A+ W+ N +T+ C + ++ +N + CA
Sbjct: 421 MKSTTTATTSMSTTKKVCAKSDLKCANGWTSFNRTSTNPFCFKVISSYNQSYEQSEALCA 480
Query: 189 IFSG**VGVSGAT 151
G GV T
Sbjct: 481 ASGGYLSGVENIT 493
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,517,419
Number of Sequences: 27780
Number of extensions: 291438
Number of successful extensions: 704
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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