Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0430
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    30   0.31 
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    29   0.71 
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr...    28   1.6  
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    28   1.6  
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    26   6.6  

>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 637 VDEMVADIIXALETQALLDNTYVXFTSDNG 726
           +D  +  +I  L+T   LDNT+V F SDNG
Sbjct: 300 LDLNIGRVIDYLKTIGELDNTFVIFMSDNG 329


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 608 YTWSXSGSIASGNGDXGMRSSQXLSSAMILKLGL 507
           YTWS  GS    NG+ G R       ++I  LG+
Sbjct: 514 YTWSMLGSAVGQNGNVGPRQISEEPMSIIFNLGI 547


>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 539

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 329 RHTVCWTKYSCSKLNSRPSRAILSSPGVPPLGH 231
           R   CWT  + +  N++  +AI+ S  +PPL H
Sbjct: 349 RKEACWTISNITAGNTQQIQAIIESNLIPPLVH 381


>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 578

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 17/70 (24%), Positives = 34/70 (48%)
 Frame = -3

Query: 325 TPFVGQSIVVVN*IPDQAAPFCPARGYHLWATGFFSTILIQIFPRIERVISGFLKYSSER 146
           +P+V  +  + + + D AA + P+ G+H  A+ ++    +  F  I       L YS ++
Sbjct: 242 SPWVDLTHSLPSVVADDAADYIPSEGFHHRASRYWPITNLDSFSTISE--KELLNYSKKQ 299

Query: 145 LFTRDISSSL 116
             T  I +S+
Sbjct: 300 ELTNFIENSI 309


>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 245 VPPGWTEWRGLVGNSVYYNYTL 310
           +PPGWTE +   G   Y+N  L
Sbjct: 5   LPPGWTEHKAPSGIPYYWNAEL 26


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,854,164
Number of Sequences: 5004
Number of extensions: 54626
Number of successful extensions: 139
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)