Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0430
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0283 - 2304024-2304111,2304224-2304343,2304594-2304715,230...    29   3.9  
08_02_0766 - 20993207-20993307,20993510-20993612,20993686-209937...    28   6.9  
01_01_0238 - 1976645-1977561,1977649-1977909,1978243-1978275,198...    28   6.9  
04_04_1324 + 32659752-32661972,32662067-32662761                       28   9.1  

>08_01_0283 -
           2304024-2304111,2304224-2304343,2304594-2304715,
           2304824-2305096,2305454-2305558,2305635-2305851,
           2306012-2306262,2306518-2306724,2307087-2307351,
           2308655-2308749
          Length = 580

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 639 DREQSFPSGPVYLVEXGKHRVRQWRRRHAEQ 547
           D E++ P GP+ +   G+HR R +R RH  Q
Sbjct: 489 DAEEN-PEGPIRIRGEGRHRFRPFRYRHLGQ 518


>08_02_0766 -
           20993207-20993307,20993510-20993612,20993686-20993730,
           20993848-20993916,20994463-20994510,20995357-20995404,
           20995492-20995551,20996063-20996119,20996403-20996471,
           20996511-20996603
          Length = 230

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 95  VFTADAMERTGNITSKQTFATILQEAGYDTFYAGKYLNQY 214
           VF A   + TG   +K    T+L E G  TF+A    N Y
Sbjct: 20  VFAAQTKDVTGLGFTKSLAMTVLSEIGDKTFFAAAGTNSY 59


>01_01_0238 -
           1976645-1977561,1977649-1977909,1978243-1978275,
           1980556-1981345
          Length = 666

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = +2

Query: 548 CSACLRRHCLTRCFPXSTKYTGPDGKLCSRSMRWSPTS 661
           C  C RR    R    S +   PDG LCS S R + TS
Sbjct: 222 CDGCRRRGGECRFEQLSFQCFCPDGLLCSNSTRTNTTS 259


>04_04_1324 + 32659752-32661972,32662067-32662761
          Length = 971

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +2

Query: 233 GPEVVPPGWTEWRGLVG-NSVYY 298
           G  + P GW+EW G VG  ++YY
Sbjct: 892 GDFIKPEGWSEWMGDVGLKTLYY 914


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,822,486
Number of Sequences: 37544
Number of extensions: 368729
Number of successful extensions: 998
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)