Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0430
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    25   0.76 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   5.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   7.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   7.1  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +1

Query: 274 LGREFSLLQLYFVQQTVCRRFRL 342
           +GR++++L+L  V  T+ R FR+
Sbjct: 489 VGRKYAMLKLKIVLSTILRNFRV 511


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 252 RAGQNGAAWSGIQFTTTILC 311
           R   +G+   G++FTTT+ C
Sbjct: 142 RLSGDGSVTYGMRFTTTLAC 161


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 12/38 (31%), Positives = 13/38 (34%)
 Frame = -2

Query: 302 SCSKLNSRPSRAILSSPGVPPLGHRXL*YHTDSNISPH 189
           +C      PS A    P   P  H    YH     SPH
Sbjct: 298 ACHSPGVYPSTAGFLPPSYHPHQHHPSQYHPHRGSSPH 335


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 246 YPRAGQNGAAWSGIQFTTTILCPTN 320
           Y R   NG+    I+ + T+ CP N
Sbjct: 139 YIRIFPNGSVLYSIRISLTLSCPMN 163


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 246 YPRAGQNGAAWSGIQFTTTILCPTN 320
           Y R   NG+    I+ + T+ CP N
Sbjct: 139 YIRIFPNGSVLYSIRISLTLSCPMN 163


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,224
Number of Sequences: 438
Number of extensions: 4159
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)