Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0430
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39910.1 68418.m04840 glycoside hydrolase family 28 protein /...    31   1.1  
At2g38400.1 68415.m04717 alanine--glyoxylate aminotransferase, p...    30   1.9  
At4g05020.1 68417.m00736 NADH dehydrogenase-related similar to a...    29   2.5  
At1g43760.1 68414.m05034 hypothetical protein                          29   3.3  
At3g10720.2 68416.m01291 pectinesterase, putative contains simil...    29   4.4  
At3g10720.1 68416.m01290 pectinesterase, putative contains simil...    29   4.4  
At4g21490.1 68417.m03107 pyridine nucleotide-disulphide oxidored...    28   5.8  

>At5g39910.1 68418.m04840 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           polygalacturonase PG1 [Glycine max] GI:5669846; contains
           PF00295: Glycosyl hydrolases family 28
           (polygalacturonases)
          Length = 373

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +1

Query: 487 NNVTVVKSPNFNIIAEDXHWLLRMPXSPLPDAMLPXLDQVYRTRWETLLSVDEMV 651
           +N+ V  SPNF +  ED  W++    +   D   P  D ++  R + ++  D  +
Sbjct: 160 SNIMVKDSPNFQMSLEDSKWVIVKQLTITADGDSPNTDGIHIQRSQNVIVYDSNI 214


>At2g38400.1 68415.m04717 alanine--glyoxylate aminotransferase,
           putative / beta-alanine-pyruvate aminotransferase,
           putative / AGT, putative similar to SP|Q64565
           Alanine--glyoxylate aminotransferase 2, mitochondrial
           precursor (EC 2.6.1.44) (AGT 2) (Beta-alanine-pyruvate
           aminotransferase) {Rattus norvegicus}; contains Pfam
           profile PF00202: aminotransferase, class III
          Length = 477

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +1

Query: 574 PDAMLPXLDQVYRTRWETLLSVDEMVADIIXALETQALLDNTYVXFTS 717
           PD + P ++Q+ R +  T+L ++  +AD   AL ++   D   V FT+
Sbjct: 116 PDVVEPVINQIKRLQHPTVLYLNHAIADFSEALASKLPGDLKVVFFTN 163


>At4g05020.1 68417.m00736 NADH dehydrogenase-related similar to
           alternative NADH-dehydrogenase [Yarrowia lipolytica]
           GI:3718005, 64 kDa mitochondrial NADH dehydrogenase
           [Neurospora crassa] GI:4753821; contains Pfam profile
           PF00070: Pyridine nucleotide-disulphide oxidoreductase
          Length = 582

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 651 DHLIDREQSFPSGPVYLVEXGKHRVRQWRRRHAEQ 547
           D + + E+S P GP+ +   G+HR R +R RH  Q
Sbjct: 487 DRMEECEKS-PEGPIRMRGEGRHRFRPFRYRHLGQ 520


>At1g43760.1 68414.m05034 hypothetical protein
          Length = 626

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -2

Query: 206 SNISPHRTCHIRLPEV**RTSVYS*YFQFSP*HPP*RLLFTVLWL*TYMPV-SKLARLGQ 30
           S +S H  C I L  +  R+     YF F   HP   +  TV W    +PV S +  LG+
Sbjct: 309 SGVSDHSPCIIILENLPKRSKKCFRYFSFLSTHPTFLVSLTVAWE-EQIPVGSHMFSLGE 367

Query: 29  HI 24
           H+
Sbjct: 368 HL 369


>At3g10720.2 68416.m01291 pectinesterase, putative contains
           similarity to pectinesterase from Vitis vinifera
           GI:15081598, Prunus persica SP|Q43062; contains Pfam
           profile PF01095 pectinesterase
          Length = 619

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +2

Query: 242 VVPPGWTEWRGLVG-NSVYY 298
           V P GW EW G +G +++YY
Sbjct: 541 VQPVGWLEWNGTIGLDTIYY 560


>At3g10720.1 68416.m01290 pectinesterase, putative contains
           similarity to pectinesterase from Vitis vinifera
           GI:15081598, Prunus persica SP|Q43062; contains Pfam
           profile PF01095 pectinesterase
          Length = 263

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +2

Query: 242 VVPPGWTEWRGLVG-NSVYY 298
           V P GW EW G +G +++YY
Sbjct: 185 VQPVGWLEWNGTIGLDTIYY 204


>At4g21490.1 68417.m03107 pyridine nucleotide-disulphide
           oxidoreductase family protein similar to GI:3718005
           alternative NADH-dehydrogenase {Yarrowia lipolytica};
           contains Pfam profile PF00070: Pyridine
           nucleotide-disulphide oxidoreductase
          Length = 568

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 621 PSGPVYLVEXGKHRVRQWRRRHAEQ 547
           P GP+ +   G+HR R +R RH  Q
Sbjct: 482 PEGPIRIRGEGRHRFRPFRYRHLGQ 506


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,983,090
Number of Sequences: 28952
Number of extensions: 291448
Number of successful extensions: 826
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)