Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0429
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    27   2.8  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    26   4.8  
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz...    25   6.4  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    25   8.5  
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce...    25   8.5  

>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = -1

Query: 272 TNAKMK*KSKMTNCS---KFKRRAKLQKYVSGAARRTA*ALSVLRITM 138
           TN K   K+K+ N S   KF+   +L+K++     R+  A   LR+T+
Sbjct: 457 TNLKENKKTKVANASAQSKFEAVNQLKKFLGSLGNRSLNAREPLRVTL 504


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +2

Query: 452 RSSRTSLLTYWIFLLQMLESARRGAEGHGRLMDP 553
           R SR SL  Y   L+QM +S +   EG GR  DP
Sbjct: 406 RRSRRSL--YSPSLMQMQQSLKSDYEGLGRTFDP 437


>SPBC56F2.07c |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/34 (32%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = +2

Query: 38  EAIQILASAAV--QPLPKSFLKYKNIQFRYISTG 133
           E I+I+AS +   +P+P+S ++ + ++ RY+  G
Sbjct: 99  EGIKIVASLSSNNEPIPESLIRKELLEIRYLHPG 132


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -1

Query: 71  VPQRR-RGFEWLRGPRAEFGTR 9
           +P RR RGFE +RG + E  T+
Sbjct: 464 LPSRRFRGFEKIRGAKGEMATK 485


>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 357

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -3

Query: 510 LSNICN--KNIQ*VSNEVRLDLYHRISILDRRYFRLSTNENPMNQNSFA 370
           L N+ N  + I  V  ++R DL +    +DR   RLS N N M   SFA
Sbjct: 229 LENLLNIVREILDVQRDMRNDLSNLTRKVDRMDMRLSRNNN-MIMRSFA 276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,530,262
Number of Sequences: 5004
Number of extensions: 51218
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)