Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0429
         (599 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0468 - 23172561-23174201                                         30   1.6  
11_01_0137 - 1137979-1138257,1138419-1138970,1139052-1139409,113...    29   2.8  
09_04_0175 - 15353903-15354005,15354189-15354280,15354408-153545...    27   8.7  
08_01_0394 - 3487360-3488229                                           27   8.7  

>02_04_0468 - 23172561-23174201
          Length = 546

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +2

Query: 41  AIQILASAAVQPLPKSFLKYKNIQFRYISTGTPL*FGARLVPXPSAAPRH 190
           A  +L+  AV+ +P   +K K     Y+  G  + F  R  P PS  PRH
Sbjct: 470 AAAVLSRFAVEVVPGQEVKPKLTTTLYMKNGLMVRFRRRSPPPPSPPPRH 519


>11_01_0137 -
           1137979-1138257,1138419-1138970,1139052-1139409,
           1139577-1139869,1140623-1140675,1140785-1140941,
           1141666-1141683,1141846-1141929,1142005-1142064,
           1142182-1142222,1142316-1142451
          Length = 676

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 360 AITRQRNFGSLDFHWSRGENIVDL-EWR 440
           A T +RNFG+    W  G N+V+L +WR
Sbjct: 543 AYTEERNFGTNSCVWLSGLNVVELKKWR 570


>09_04_0175 -
           15353903-15354005,15354189-15354280,15354408-15354553,
           15354661-15354814,15354885-15354985,15355055-15355145,
           15355146-15355378,15355501-15355736,15355839-15356066,
           15356150-15356370,15356869-15356990,15357125-15357451,
           15357616-15357754,15357822-15357901,15358478-15358678,
           15359431-15359757,15360144-15360897
          Length = 1184

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 455 SSRTSLLTYWIFLLQMLESARRGAEGHGRLMDPPARXSMW 574
           S R+SL   W+ LL ++ +ARR +    +   PP+    W
Sbjct: 3   SPRSSLPPLWLLLLCVVAAARRASMARAQQPMPPSFAFSW 42


>08_01_0394 - 3487360-3488229
          Length = 289

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = -2

Query: 553 RVHQSSVTFGSATRAFQHLQQKYPISQQ*GPARPVPSHLHSRSTIFS 413
           R  Q  V   SA     ++  + P S Q GPA P  + LH R  I S
Sbjct: 112 RRRQRGVCVLSAAGTVANVTLRQPQSAQPGPASPAVATLHGRFEILS 158


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,344,535
Number of Sequences: 37544
Number of extensions: 366193
Number of successful extensions: 777
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)