Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0429
         (599 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7264| Best HMM Match : Ribosomal_L44 (HMM E-Value=3.3)              31   0.94 
SB_43774| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.21)             29   2.9  
SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_17635| Best HMM Match : CUB (HMM E-Value=0)                         27   8.8  

>SB_7264| Best HMM Match : Ribosomal_L44 (HMM E-Value=3.3)
          Length = 152

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 19/75 (25%), Positives = 30/75 (40%)
 Frame = -3

Query: 354 KNRTKRTCSRHNYKI*MEYNRHKAMRKHKCENEIKIKNDQLF*IQTARETTEICQWRGAA 175
           K   K+ C +   K   E    KA +K     ++ +K+D++  +      TE+  W G  
Sbjct: 52  KRNKKKICRKDKRK--QERVHKKAKKKEFFSKKLAVKHDEV--LNDCSIETEVSSWNGVI 107

Query: 174 DGXGTKRAPNHNGVP 130
              GTK      G P
Sbjct: 108 VTPGTKAYEKQEGKP 122


>SB_43774| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.21)
          Length = 429

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +1

Query: 295 VIFHLNFVVVSRTGAFCPIFLVPSPGKGILVHWIFIGREAK 417
           V+ +LNFV    +  F    L  SP KG  V W+ + R  K
Sbjct: 327 VLLYLNFVDAGGSNVFLDSELSVSPQKGSAVFWLNMRRSGK 367


>SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1067

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = -3

Query: 273 HKCENEIKIKNDQLF*IQTARETTEICQWRGAADGXGTKRAPNH 142
           HK  ++    ++  F +  A+E  + C W  A      K  PNH
Sbjct: 33  HKSVDKRSTSDEAYFAVAAAQEAFDSCGWTPATQEEKEKTGPNH 76


>SB_17635| Best HMM Match : CUB (HMM E-Value=0)
          Length = 630

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 414 ENIVDLEWRCDGTGLAGPH 470
           +N +  +W+CDGT   G H
Sbjct: 427 DNYIQCQWKCDGTDDCGDH 445


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,436,254
Number of Sequences: 59808
Number of extensions: 406494
Number of successful extensions: 895
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)