Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0429
         (599 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090822-1|BAC57919.1|  468|Anopheles gambiae gag-like protein p...    27   0.46 
EU068741-1|ABU40241.1|  993|Anopheles gambiae anion exchanger pr...    26   0.81 
AF043443-1|AAC05668.1|  232|Anopheles gambiae putative pupal-spe...    23   10.0 

>AB090822-1|BAC57919.1|  468|Anopheles gambiae gag-like protein
           protein.
          Length = 468

 Score = 27.1 bits (57), Expect = 0.46
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 4   RGLVPNSARGPRSHSNPRLRCGTT 75
           RG V      P +HSN  +RCGT+
Sbjct: 412 RGHVSRDCHSPVNHSNVCIRCGTS 435


>EU068741-1|ABU40241.1|  993|Anopheles gambiae anion exchanger
           protein.
          Length = 993

 Score = 26.2 bits (55), Expect = 0.81
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 10  LVPNSARGPRSHSNPRLRC 66
           L+P  ARGPR+  N  L C
Sbjct: 645 LIPEDARGPRNQPNTALFC 663


>AF043443-1|AAC05668.1|  232|Anopheles gambiae putative
           pupal-specific cuticular proteinCP2d protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 10.0
 Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 8/63 (12%)
 Frame = -2

Query: 583 AEPPHRVSGGRVHQSSVTFGSATRAFQHLQQKYPISQQ*GP----ARPVPSH----LHSR 428
           A+P H+V    VH SS        A        PI+    P    A P+  H     HS 
Sbjct: 158 AQPVHKVIAQPVHVSSYAHAPVAHATVQHHHAAPIAHYAAPIAHHAAPIAHHAAPIAHST 217

Query: 427 STI 419
           S+I
Sbjct: 218 SSI 220


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 652,902
Number of Sequences: 2352
Number of extensions: 13489
Number of successful extensions: 47
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 58029966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)