Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0429
         (599 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81581-6|CAB04666.1|  679|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z81581-5|CAB04667.2|  646|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U38937-1|AAA93079.1|  441|Caenorhabditis elegans LIN-1 protein.        29   3.3  
U38935-1|AAB60254.1|  441|Caenorhabditis elegans LIN-1 protein.        29   3.3  
AF067606-1|AAC17530.3|  441|Caenorhabditis elegans Abnormal cell...    29   3.3  

>Z81581-6|CAB04666.1|  679|Caenorhabditis elegans Hypothetical
           protein T02E1.3b protein.
          Length = 679

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/46 (32%), Positives = 18/46 (39%)
 Frame = -2

Query: 589 GEAEPPHRVSGGRVHQSSVTFGSATRAFQHLQQKYPISQQ*GPARP 452
           G   PPH+      HQS        +   H  Q+Y  S Q GP  P
Sbjct: 419 GRHRPPHQHPIHHHHQSQHQLHQHQQYLHHAAQQYRYSHQQGPQHP 464


>Z81581-5|CAB04667.2|  646|Caenorhabditis elegans Hypothetical
           protein T02E1.3a protein.
          Length = 646

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/46 (32%), Positives = 18/46 (39%)
 Frame = -2

Query: 589 GEAEPPHRVSGGRVHQSSVTFGSATRAFQHLQQKYPISQQ*GPARP 452
           G   PPH+      HQS        +   H  Q+Y  S Q GP  P
Sbjct: 386 GRHRPPHQHPIHHHHQSQHQLHQHQQYLHHAAQQYRYSHQQGPQHP 431


>U38937-1|AAA93079.1|  441|Caenorhabditis elegans LIN-1 protein.
          Length = 441

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
 Frame = +2

Query: 455 SSRTSLLTYWIFLLQMLESAR--------RGAEGHGRLMDPPARXSMW 574
           SS  S++T W FLL++L+  +        RG +G  RL+D  A    W
Sbjct: 58  SSVDSIITLWQFLLELLQQDQNGDIIEWTRGTDGEFRLIDAEAVARKW 105


>U38935-1|AAB60254.1|  441|Caenorhabditis elegans LIN-1 protein.
          Length = 441

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
 Frame = +2

Query: 455 SSRTSLLTYWIFLLQMLESAR--------RGAEGHGRLMDPPARXSMW 574
           SS  S++T W FLL++L+  +        RG +G  RL+D  A    W
Sbjct: 58  SSVDSIITLWQFLLELLQQDQNGDIIEWTRGTDGEFRLIDAEAVARKW 105


>AF067606-1|AAC17530.3|  441|Caenorhabditis elegans Abnormal cell
           lineage protein 1 protein.
          Length = 441

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
 Frame = +2

Query: 455 SSRTSLLTYWIFLLQMLESAR--------RGAEGHGRLMDPPARXSMW 574
           SS  S++T W FLL++L+  +        RG +G  RL+D  A    W
Sbjct: 58  SSVDSIITLWQFLLELLQQDQNGDIIEWTRGTDGEFRLIDAEAVARKW 105


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,419,288
Number of Sequences: 27780
Number of extensions: 305919
Number of successful extensions: 676
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)