Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0429
         (599 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.75 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   2.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   4.0  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   9.2  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 38  EAIQILASAAVQPLPKSFLKYKNIQFRYISTGTPL 142
           E  QILA   ++ +P   +K+KN   +Y +T  P+
Sbjct: 245 EVEQILAKKEIKGVPTYLIKWKNWDLKY-NTWEPI 278


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 365 DGTKKIGQNAPVLDTTTKFKWNITGTKL 282
           DGT+ I ++  VL  T    +N+T  KL
Sbjct: 193 DGTEGIAKSGDVLVETEPIYYNLTMVKL 220


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 446 WYRSSRTSLLTYWIFLLQMLE 508
           W+  S    +  W FLLQ LE
Sbjct: 58  WFAGSTNIGINKWRFLLQCLE 78


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 225 IQTARETTEICQWRGAADGXGTKRAPNH 142
           +Q  +   E   WR A    GT++ PN+
Sbjct: 136 VQRIKPYDEYYVWRDARIVNGTRQPPNN 163


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,435
Number of Sequences: 438
Number of extensions: 4499
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)