Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0429
         (599 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37140.1 68415.m04556 terpene synthase/cyclase-related contai...    29   3.1  
At2g46240.1 68415.m05750 IQ domain-containing protein / BAG doma...    27   7.2  
At3g66652.1 68416.m00776 fip1 motif-containing protein contains ...    27   9.5  

>At2g37140.1 68415.m04556 terpene synthase/cyclase-related contains
           Pfam profile PF03936: Terpene synthase family, metal
           binding domain
          Length = 107

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -1

Query: 119 IEIECFC-ISKNFLGAVVPQRRRGFEWLRGPR 27
           +E+  +  +S +FLG V   RR+ +EWL+  R
Sbjct: 73  VEVSMYVTVSCSFLGLVQTARRKSYEWLKSRR 104


>At2g46240.1 68415.m05750 IQ domain-containing protein / BAG
           domain-containing protein contains Pfam profiles
           PF00612: IQ calmodulin-binding motif, PF02179: BAG
           (Apoptosis regulator Bcl-2 protein) domain
          Length = 1043

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 404 PMKIQ*TKIPLPGDGTKKIGQNAPVLDT 321
           P+K+    +P P + TK+I +N PV  T
Sbjct: 412 PVKLSENHLPKPTEPTKRIAKNEPVKST 439


>At3g66652.1 68416.m00776 fip1 motif-containing protein contains
           Pfam profile PF05182: Fip1 motif
          Length = 980

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 518 RGAEGHGRLMDPPARXSMWRFGFPNP 595
           R A  +   +DP    S +R+ FPNP
Sbjct: 127 RNASANNACIDPSLGMSQYRYSFPNP 152


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,504,828
Number of Sequences: 28952
Number of extensions: 280765
Number of successful extensions: 620
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)