Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0428
         (400 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89...    81   2e-16
02_02_0220 - 7992124-7992351,7992458-7992562,7993499-7993711,799...    29   1.0  
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485...    27   5.5  
06_01_0469 + 3322886-3323564,3324033-3324953,3325025-3325155,332...    27   7.2  
01_06_1007 - 33733500-33733604,33733837-33733917,33734191-337342...    27   7.2  
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477...    26   9.5  
07_03_0035 - 12677942-12678568                                         26   9.5  
07_01_0738 + 5626062-5626862                                           26   9.5  

>08_01_0113 +
           897970-898038,898148-898271,898811-898896,898996-899049
          Length = 110

 Score = 81.4 bits (192), Expect = 2e-16
 Identities = 37/65 (56%), Positives = 50/65 (76%)
 Frame = +1

Query: 70  VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 249
           +S +E+AC  +ALIL DD + +T EKI+T++KAA + VE YWPGLFAK LE  +V DLI 
Sbjct: 1   MSSSEVACTLAALILHDDGIPITSEKIATLVKAANIKVEAYWPGLFAKLLEHRSVDDLIL 60

Query: 250 NIGSG 264
           ++GSG
Sbjct: 61  SVGSG 65


>02_02_0220 -
           7992124-7992351,7992458-7992562,7993499-7993711,
           7993937-7994196,7994425-7994701,7995226-7995371,
           7995519-7995903,7996680-7996964
          Length = 632

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 14/41 (34%), Positives = 26/41 (63%)
 Frame = +1

Query: 34  GLRQLARSKLKMVSKAELACVYSALILVDDDVAVTGEKIST 156
           G+R+LA+     V+K +     S  +L+ +DVA+TG+ ++T
Sbjct: 249 GIRKLAQIFQSSVAKKKAVGKKSKALLLGEDVAITGDCVTT 289


>05_03_0235 -
           10747649-10748118,10748226-10748314,10748477-10748574,
           10748934-10749046,10749107-10749200,10749557-10749589,
           10749734-10749851,10750110-10750210,10751036-10751233,
           10751337-10751471,10751752-10751830,10753650-10753738,
           10753835-10753987,10754100-10754285
          Length = 651

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 142 HQLRQHHHPPG*EQSKH 92
           HQ R+HHHPP  +   H
Sbjct: 562 HQRRRHHHPPAWDVEGH 578


>06_01_0469 +
           3322886-3323564,3324033-3324953,3325025-3325155,
           3325237-3325317,3328173-3328820
          Length = 819

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 21/62 (33%), Positives = 27/62 (43%)
 Frame = +1

Query: 43  QLARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALE 222
           Q A   LK   K  +AC    L+LV DD   T     T+ KA A D+     G   +AL 
Sbjct: 657 QAADHALKRQVKHSVACGVDWLVLVSDDSDFT----DTVRKARAADLRTVVVGDGCRALG 712

Query: 223 GI 228
            +
Sbjct: 713 SV 714


>01_06_1007 -
           33733500-33733604,33733837-33733917,33734191-33734238,
           33734364-33734549,33735148-33735678,33735823-33735864,
           33735945-33736065,33736200-33736281,33737169-33737227,
           33738492-33738564,33738694-33738913
          Length = 515

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 200 VCSPKPWKASMSVT*SPTSALEWVLLRPLV 289
           VC  +P         SP  +L WVLLRP++
Sbjct: 482 VCKLRPTALLADGVASPLRSLAWVLLRPIM 511


>07_03_1291 +
           25545749-25546262,25546989-25547669,25547693-25547751,
           25549152-25549242,25549330-25549743,25550191-25550243,
           25550947-25551177,25551492-25551708,25551790-25551890,
           25552446-25552532,25553536-25553676,25553839-25553961,
           25554070-25554522,25554931-25555308,25555410-25556060,
           25556264-25556368,25556482-25556707,25557204-25557241
          Length = 1520

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -2

Query: 216 GFGEQTWPIW--LYIYSRRFQDGGNFLTSYG 130
           G G+    +W  +Y +S + QDG NF+   G
Sbjct: 627 GAGKGLMTVWHAMYSHSSKIQDGSNFIDETG 657


>07_03_0035 - 12677942-12678568
          Length = 208

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +2

Query: 194 GQVCSPKPWKASMSVT*SPTSALEWVLLRP 283
           G V SP  + A M    SPT+A  W LLRP
Sbjct: 96  GVVASPARFGAVMLA--SPTAANRWFLLRP 123


>07_01_0738 + 5626062-5626862
          Length = 266

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -3

Query: 263 PEPMLVIRSRTLMPSKALANRPGQYGSTSTAAAFKMVEIFSPVTATSSST 114
           P+  L  R RT++  K L     Q   T + A +       P  ATS+ST
Sbjct: 102 PDSPLASRIRTILTHKKLKKSMPQPTITFSTAVYHHARSTVPAAATSTST 151


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,986,174
Number of Sequences: 37544
Number of extensions: 179682
Number of successful extensions: 467
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)