Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0428
         (400 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal pro...   105   9e-24
U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal prote...   102   1e-22
Z81030-5|CAB02709.1|  324|Caenorhabditis elegans Hypothetical pr...    29   0.93 
U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr...    27   3.7  
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr...    27   3.7  
Z75955-6|CAB00120.1|  451|Caenorhabditis elegans Hypothetical pr...    26   8.7  
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    26   8.7  
AF036704-5|AAB88558.2|  360|Caenorhabditis elegans Hypothetical ...    26   8.7  

>AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal
           protein, acidic protein 1 protein.
          Length = 111

 Score =  105 bits (253), Expect = 9e-24
 Identities = 47/66 (71%), Positives = 59/66 (89%)
 Frame = +1

Query: 67  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 246
           M S  ELACVY+ALIL DD+VA+TGEKI+T+LKAA V+ EPYWPGLFAKALEG++V++LI
Sbjct: 1   MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLI 60

Query: 247 TNIGSG 264
           T++ SG
Sbjct: 61  TSVSSG 66


>U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal protein
           P1 homolog protein.
          Length = 111

 Score =  102 bits (244), Expect = 1e-22
 Identities = 46/66 (69%), Positives = 58/66 (87%)
 Frame = +1

Query: 67  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 246
           M S  ELACVY+ALIL DD+VA+TGEKI+T+LKAA V+ EP WPGLFAKALEG++V++LI
Sbjct: 1   MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPNWPGLFAKALEGVDVKNLI 60

Query: 247 TNIGSG 264
           T++ SG
Sbjct: 61  TSVSSG 66


>Z81030-5|CAB02709.1|  324|Caenorhabditis elegans Hypothetical
           protein C01G10.7 protein.
          Length = 324

 Score = 29.5 bits (63), Expect = 0.93
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +1

Query: 55  SKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPY 192
           S  KM+ K  +    S ++ ++D VA+T +  + +  AAA+D  PY
Sbjct: 34  SNQKMLDKVPMMQADSVVLELEDGVALTAKADARVRAAAALDKLPY 79


>U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical
           protein B0432.7 protein.
          Length = 621

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +1

Query: 91  CVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGS 261
           C ++ L + DDD  +T +  + +L+   V      PG+   A  G NV +    IGS
Sbjct: 269 CTFNVLTIGDDDCMMTRQIAADLLRRLVVSESSTTPGVPTLASTGKNVLNYGFFIGS 325


>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 170  AAFKMVEIFSPVTATSSSTRMRAE*THANSAFDTIFS 60
            A   M EIFSPV++T+   R  +      S +DTI S
Sbjct: 2794 AGIPMDEIFSPVSSTADGNRRFSNFYEDRSGWDTIGS 2830


>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 170  AAFKMVEIFSPVTATSSSTRMRAE*THANSAFDTIFS 60
            A   M EIFSPV++T+   R  +      S +DTI S
Sbjct: 2794 AGIPMDEIFSPVSSTADGNRRFSNFYEDRSGWDTIGS 2830


>Z75955-6|CAB00120.1|  451|Caenorhabditis elegans Hypothetical
           protein R07B7.11 protein.
          Length = 451

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 8/32 (25%), Positives = 21/32 (65%)
 Frame = +1

Query: 70  VSKAELACVYSALILVDDDVAVTGEKISTILK 165
           +S+  + C++SA +++ +D+ + G+    +LK
Sbjct: 265 ISQFTVWCIWSAPLIMSNDLRIIGDSFKDVLK 296


>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 15/56 (26%), Positives = 22/56 (39%)
 Frame = +3

Query: 57   KTKNGVKS*ISMCLLCSHPGG**CCRNW*ENFHHLESGGCRCRAILARSVRQSLGR 224
            K  N   S  S+C +C+H G       W E   +    GC CR   ++  +    R
Sbjct: 5007 KDYNESFSQFSICNICNHGGHVNHIATWFETEKYCPVAGCDCRCQRSKQTKHLKAR 5062


>AF036704-5|AAB88558.2|  360|Caenorhabditis elegans Hypothetical
           protein ZK185.1 protein.
          Length = 360

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 89  ANSAFDTIFSFERASCRRP*IKREQARLS 3
           A++++  IFSF +    R  IKRE AR S
Sbjct: 190 ASTSYTIIFSFHKVDKARRRIKREMARKS 218


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,064,254
Number of Sequences: 27780
Number of extensions: 134473
Number of successful extensions: 363
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)