Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0428
         (400 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)...    80   5e-16
At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)...    80   5e-16
At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative     80   6e-16
At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)...    80   6e-16
At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)...    80   6e-16
At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)       79   1e-15
At3g49460.1 68416.m05406 60S acidic ribosomal protein-related co...    38   0.002
At5g05340.1 68418.m00575 peroxidase, putative similar to peroxid...    28   2.6  
At5g45930.1 68418.m05648 magnesium-chelatase subunit chlI, chlor...    27   3.5  
At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast...    27   4.6  
At1g29120.2 68414.m03565 expressed protein                             27   6.1  
At1g29120.1 68414.m03564 expressed protein                             27   6.1  
At1g09575.1 68414.m01074 expressed protein contains Pfam domain,...    26   8.0  

>At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)
           similar to acidic ribosomal protein p1
          Length = 113

 Score = 80.2 bits (189), Expect = 5e-16
 Identities = 35/66 (53%), Positives = 49/66 (74%)
 Frame = +1

Query: 67  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 246
           M +  ELAC Y+ +IL D+ +A+T +KI+T++KAA V++E YWP LFAK  E  NV DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60

Query: 247 TNIGSG 264
            N+G+G
Sbjct: 61  MNVGAG 66


>At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)
           similar to acidic ribosomal protein p1
          Length = 113

 Score = 80.2 bits (189), Expect = 5e-16
 Identities = 35/66 (53%), Positives = 49/66 (74%)
 Frame = +1

Query: 67  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 246
           M +  ELAC Y+ +IL D+ +A+T +KI+T++KAA V++E YWP LFAK  E  NV DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60

Query: 247 TNIGSG 264
            N+G+G
Sbjct: 61  MNVGAG 66


>At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative
          Length = 111

 Score = 79.8 bits (188), Expect = 6e-16
 Identities = 36/65 (55%), Positives = 47/65 (72%)
 Frame = +1

Query: 70  VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 249
           +S +ELAC Y+ALIL DD + +T E IS ++K A V+VE YWP LFAK  E  N+ DLI 
Sbjct: 1   MSTSELACTYAALILHDDGIEITAENISKLVKTANVNVESYWPSLFAKLCEKKNIDDLIM 60

Query: 250 NIGSG 264
           N+G+G
Sbjct: 61  NVGAG 65


>At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)
           similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
           from [Arabidopsis thaliana]
          Length = 112

 Score = 79.8 bits (188), Expect = 6e-16
 Identities = 42/111 (37%), Positives = 56/111 (50%)
 Frame = +1

Query: 67  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 246
           M +  ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK  E  NV DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60

Query: 247 TNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDXDMGFXLF 399
            N+G+G                                   SD D+GF LF
Sbjct: 61  MNVGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLF 111


>At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)
           similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
           from [Arabidopsis thaliana]
          Length = 112

 Score = 79.8 bits (188), Expect = 6e-16
 Identities = 42/111 (37%), Positives = 56/111 (50%)
 Frame = +1

Query: 67  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 246
           M +  ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK  E  NV DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60

Query: 247 TNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDXDMGFXLF 399
            N+G+G                                   SD D+GF LF
Sbjct: 61  MNVGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLF 111


>At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)
          Length = 113

 Score = 79.0 bits (186), Expect = 1e-15
 Identities = 35/66 (53%), Positives = 48/66 (72%)
 Frame = +1

Query: 67  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 246
           M +  ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK  E  NV DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60

Query: 247 TNIGSG 264
            N+G+G
Sbjct: 61  MNVGAG 66


>At3g49460.1 68416.m05406 60S acidic ribosomal protein-related
           contains weak similarity to Swiss-Prot:52855 60S acidic
           ribosomal protein P1 (L12) [Zea mays]
          Length = 46

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 20/45 (44%), Positives = 30/45 (66%)
 Frame = +1

Query: 70  VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGL 204
           ++  ELAC Y+AL+L D    VT   +ST++K A +++E YWP L
Sbjct: 1   MATGELACTYAALLLHDH---VT---MSTLVKTANLNIESYWPSL 39


>At5g05340.1 68418.m00575 peroxidase, putative similar to peroxidase
           [Nicotiana tabacum] gi|5381253|dbj|BAA82306; similar to
           Peroxidase P7 [Brassica rapa (Turnip)] SWISS-PROT:P00434
          Length = 324

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 218 KALANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTR 111
           +  +N P  + S  TAA  KM +I SP+T +S   R
Sbjct: 283 RGYSNNPSSFNSDFTAAMIKMGDI-SPLTGSSGEIR 317


>At5g45930.1 68418.m05648 magnesium-chelatase subunit chlI,
           chloroplast, putative / Mg-protoporphyrin IX chelatase,
           putative similar to SP|P161127 from Arabidopsis
           thaliana, SP|P93162 from Glycine max, SP|O22436 from
           Nicotiana tabacum; non-consensus AA donor splice site at
           exon 1, TG acceptor splice site at exon 2
          Length = 418

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +1

Query: 64  KMVSKAELACVYSALILVDDDVAVTGEKIS---TILKAAAVDVEPYWPGLFAKALEGI 228
           K+    EL+ + + + +VD  +  T +++     I KA    V+ + PGL AKA  GI
Sbjct: 158 KVQKGEELSVIETKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGI 215


>At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1,
           plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical
           to plastidic lipoamide dehydrogenase from Arabidopsis
           thaliana [gi:7159282]
          Length = 570

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 15/78 (19%), Positives = 34/78 (43%)
 Frame = +1

Query: 34  GLRQLARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAK 213
           G +++   K  +++  ++     ++  V   + V G+ + T   A  ++  P W  +   
Sbjct: 203 GPQKVKYGKDNIITAKDIIIATGSVPFVPKGIEVDGKTVITSDHALKLESVPEWIAIVGS 262

Query: 214 ALEGINVRDLITNIGSGV 267
              G+   D+ T +GS V
Sbjct: 263 GYIGLEFSDVYTALGSEV 280


>At1g29120.2 68414.m03565 expressed protein
          Length = 455

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +1

Query: 46  LARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEP 189
           LA S   + S+  +A +YSA +    DVAV+    S +L+     +EP
Sbjct: 176 LAHSLGGLFSRHAVAVLYSAAMAQVSDVAVSQSGNSNLLRGRIAGLEP 223


>At1g29120.1 68414.m03564 expressed protein
          Length = 455

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +1

Query: 46  LARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEP 189
           LA S   + S+  +A +YSA +    DVAV+    S +L+     +EP
Sbjct: 176 LAHSLGGLFSRHAVAVLYSAAMAQVSDVAVSQSGNSNLLRGRIAGLEP 223


>At1g09575.1 68414.m01074 expressed protein contains Pfam domain,
           PF04678: Protein of unknown function, DUF607
          Length = 292

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = -2

Query: 255 DVGDQVTDIDAFQGFGEQTWPIWLYIYSRRFQDGGNFLTSYGNIIIHQDE 106
           DV    T ++A QG G    P   ++++R   D G  L     + +H D+
Sbjct: 78  DVVSYSTLLEASQGMGIARSPDEAHVFARVLDDAGVVLIFRDKVYLHPDK 127


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,819,526
Number of Sequences: 28952
Number of extensions: 130234
Number of successful extensions: 317
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)