Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0427
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    29   0.71 
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    28   1.2  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    28   1.6  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    27   2.9  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    27   3.8  
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip...    27   3.8  
SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   5.0  
SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   5.0  

>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 537 FDVNQAAGRKTHVKSICNITKEHSSLIPHNV 445
           +D+N  A R   +K++C I +  S L+P+ V
Sbjct: 469 YDLNTKASRNRLIKALCTIPRTSSFLVPYYV 499


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 313 LTPIGVMRLPEPMDTIM*ISPAPSLY 236
           +TPIG  R P P+DT + + P+   Y
Sbjct: 709 ITPIGSFRRPYPLDTTLIVKPSGQPY 734


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = -1

Query: 615 KRSTYRRHRSPSLYHVAIDICRHNPRFDVNQAAGRKTHVK-SICNITKEH-SSLIPHNVG 442
           +  T R + S  L    +D    +P   VNQ+  RKTH + +I  + ++  SS +P+   
Sbjct: 148 RERTSRINYSVPLAFPPVDEMDGDPSSQVNQSRSRKTHSELAITKLLRQQVSSFMPYIDS 207

Query: 441 KGQEDD 424
            G E +
Sbjct: 208 SGSESE 213


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
 Frame = -1

Query: 609 STYRRHRSPSLYHVAIDICRHNPRFDVNQAAGRKTHVKSICNITKEHSSLIPHNVGKG-- 436
           S  R+H +PS +        +NP F    + GR      +C   K H   +P  +  G  
Sbjct: 515 SVMRKHLTPSAFITTASFSTYNPEFSCADSFGRVI----VCK-RKNHKENLPAQLANGIY 569

Query: 435 QEDDYVLL 412
           + DD ++L
Sbjct: 570 RLDDTLVL 577


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -1

Query: 588 SPSLYHVAIDICRHNPR-FDVNQAAGRKTHVKSICNITKEHSS 463
           S SL  + ++  +  P    V  A+ + TH  SI N+T  HSS
Sbjct: 273 SSSLLPLELNTLQSTPTSVSVGSASSQGTHEYSIINLTSNHSS 315


>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
           antiporter Sod22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/58 (22%), Positives = 28/58 (48%)
 Frame = -1

Query: 597 RHRSPSLYHVAIDICRHNPRFDVNQAAGRKTHVKSICNITKEHSSLIPHNVGKGQEDD 424
           R R P+L H+   I  H PR+    +   ++H++   ++ +     +  N+G  + +D
Sbjct: 630 RQREPTLGHIESSIENHRPRYSRQNS---ESHLRE-NSVERRRREQVLTNIGDSESED 683


>SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 242

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +1

Query: 316 FHVFLPTL*TSLCILSFY-YFKXXXXXXXXXXXXQNVVIFLSFSYIM 453
           FH+FLP + T L   +FY YF                 I L F+Y+M
Sbjct: 78  FHIFLPFILTLLLYHNFYNYFDQALADLNSVVKYVIETIVLIFTYVM 124


>SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 238

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +1

Query: 316 FHVFLPTL*TSLCILSFY-YFKXXXXXXXXXXXXQNVVIFLSFSYIM 453
           FH+FLP + T L   +FY YF                 I L F+Y+M
Sbjct: 78  FHIFLPFILTLLLYHNFYNYFDQALADLNSVVKYVIETIVLIFTYVM 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,082,988
Number of Sequences: 5004
Number of extensions: 64573
Number of successful extensions: 162
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)