Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0427
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0093 - 12422558-12422607,12422679-12422935,12423565-124239...    30   2.3  
02_05_0303 + 27717097-27717149,27717515-27717635,27717746-277180...    29   5.2  
01_06_1598 + 38535077-38535368,38536381-38536463,38536575-385366...    28   6.9  

>01_03_0093 -
           12422558-12422607,12422679-12422935,12423565-12423932,
           12423939-12424800,12425247-12425464
          Length = 584

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
 Frame = -1

Query: 573 HVAIDICRHNPR-----FDVNQAAGRKTHVKSICNITKE 472
           H   D+C+HNP       DV +  GR +    +C + +E
Sbjct: 105 HTVFDVCQHNPESVGRLSDVEELPGRNSKEPKVCRVGQE 143


>02_05_0303 +
           27717097-27717149,27717515-27717635,27717746-27718057,
           27718172-27718276,27718367-27718821,27718964-27719094,
           27719215-27719268,27719378-27719747,27719848-27719981,
           27720081-27720319
          Length = 657

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = -1

Query: 585 PSLY-HVAIDICRHNPRFD-VNQAAGRKTHVKSICNITKEHSSLIPHNVGKGQED 427
           PS+Y H +I +   +P  + +N +  + TH  ++     +H+ +IP ++  G ED
Sbjct: 186 PSIYDHPSITL--KDPIIEQINHSVQKLTHATNLLQFIGQHALIIPEDMHSGSED 238


>01_06_1598 +
           38535077-38535368,38536381-38536463,38536575-38536643,
           38537127-38537182,38537275-38537354,38537496-38537578,
           38537682-38537759,38538133-38538201,38538366-38538434,
           38538520-38538566,38538656-38538746,38538839-38538892
          Length = 356

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 247 PSLYYNTFEMIDGDRIFFTPDITSVEYLR 161
           PSL  + FE++  D +  T D++ VEYL+
Sbjct: 297 PSLLRDGFELVKRDGLEVTDDVSIVEYLK 325


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,805,920
Number of Sequences: 37544
Number of extensions: 424099
Number of successful extensions: 879
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)