Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0427
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31198| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_28247| Best HMM Match : Na_Ca_ex (HMM E-Value=2e-27)                29   5.3  
SB_39219| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_31198| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -1

Query: 627 DQVGKRSTYRRHRSPSLYHVAIDICRHNPRFDVNQAAGRKTH 502
           D+ G  S   RH   SL H + D+  HNP    NQ   R++H
Sbjct: 50  DEQGVESAKTRHVESSLEHASGDVRVHNP----NQMVYRRSH 87


>SB_28247| Best HMM Match : Na_Ca_ex (HMM E-Value=2e-27)
          Length = 236

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +3

Query: 594 VFCMCFFYLLDPYFII*FEFYYNKHLN*NLNFQTSNYYFIFVYLXVIVEI 743
           +F  CFF L      +   +YY   LN  +      +YFIF+ + V+VE+
Sbjct: 172 LFISCFFILGSIAVTLIIIWYYKWTLNKKVGCIYLVFYFIFMSISVVVEM 221


>SB_39219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1951

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 21/84 (25%), Positives = 35/84 (41%)
 Frame = -1

Query: 624 QVGKRSTYRRHRSPSLYHVAIDICRHNPRFDVNQAAGRKTHVKSICNITKEHSSLIPHNV 445
           Q+ K   + +  +   Y   +D      + ++NQ   +  H K IC+ITKE   L    +
Sbjct: 634 QLLKSFEFEKRDTEKFYKNLLDNREVEFQNELNQL--KNNHEKEICDITKEKERLNEQLI 691

Query: 444 GKGQEDDYVLLNCNQTAP*NNSLK 373
           G   ++  +L         N SLK
Sbjct: 692 GLNNKNVEILETLKGLEEENKSLK 715


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,676,651
Number of Sequences: 59808
Number of extensions: 475206
Number of successful extensions: 1115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)