Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0427
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical ...    29   3.5  
AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protei...    29   3.5  

>Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical protein
            W02B9.1b protein.
          Length = 2920

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -3

Query: 352  TDWFKVLAEKHGKLTPIGVMRLPEPMD 272
            +D+F V  +K  K + +GV+R+ +P+D
Sbjct: 1705 SDYFYVTTDKDSKQSSVGVLRVKQPLD 1731


>Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical protein
            W02B9.1b protein.
          Length = 2920

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -3

Query: 352  TDWFKVLAEKHGKLTPIGVMRLPEPMD 272
            +D+F V  +K  K + +GV+R+ +P+D
Sbjct: 1705 SDYFYVTTDKDSKQSSVGVLRVKQPLD 1731


>AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical
            protein W02B9.1b protein.
          Length = 2920

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -3

Query: 352  TDWFKVLAEKHGKLTPIGVMRLPEPMD 272
            +D+F V  +K  K + +GV+R+ +P+D
Sbjct: 1705 SDYFYVTTDKDSKQSSVGVLRVKQPLD 1731


>AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protein
            protein.
          Length = 2920

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -3

Query: 352  TDWFKVLAEKHGKLTPIGVMRLPEPMD 272
            +D+F V  +K  K + +GV+R+ +P+D
Sbjct: 1705 SDYFYVTTDKDSKQSSVGVLRVKQPLD 1731


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,963,586
Number of Sequences: 27780
Number of extensions: 365776
Number of successful extensions: 867
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)