Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0427
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.8  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   3.1  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    23   3.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   9.3  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   9.3  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 333 WQKNMESSRLSVLCVFRSPWTL*CEYLQ 250
           WQ  + ++RL  L +  +PW+  C++LQ
Sbjct: 908 WQVTL-NARLVELSLGSNPWSCRCKFLQ 934


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +1

Query: 475 FCDVAYGFDMCFTTGCLVNVKPRVMSAYIY 564
           FCD    FD+  +T  ++N+    +  YI+
Sbjct: 97  FCDTWIAFDVMCSTASILNLCAISLDRYIH 126


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +1

Query: 79  KAHLMGSGYRRPW 117
           K HL G  + RPW
Sbjct: 44  KCHLCGKAFSRPW 56


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 16  IDRRIPHISRAPLSP 60
           +D ++PH  + PLSP
Sbjct: 431 LDGKLPHDDQPPLSP 445


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 84  PPDGEWLPSPMDFSNA 131
           PPD  W P  + F+NA
Sbjct: 104 PPDKVWKPDIVLFNNA 119


>AF388659-3|AAK71993.1|  548|Apis mellifera
          1D-myo-inositol-trisphosphate 3-kinaseisoform C
          protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 10 TIIDRRIPHISRAP 51
          +I+DRR P  SR+P
Sbjct: 31 SIVDRRSPSSSRSP 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,504
Number of Sequences: 438
Number of extensions: 4833
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)