Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0426
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p... 31 0.21
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 2.0
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.0
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 2.0
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 27 2.6
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 3.4
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 26 4.5
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 26 6.0
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 6.0
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 26 6.0
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy... 26 6.0
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 7.9
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe... 25 7.9
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 25 7.9
>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 301
Score = 30.7 bits (66), Expect = 0.21
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = +2
Query: 83 THLDMIGRNETP----SKKARFWQSFVRSLKGSEDIRAEERYRPTRR 211
T + GR+ +P S+K R + +RS S R E+RYRPTRR
Sbjct: 201 TERNRYGRSPSPHSRFSEKPRGERYDIRSYSRSHKERYEDRYRPTRR 247
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 27.5 bits (58), Expect = 2.0
Identities = 19/70 (27%), Positives = 28/70 (40%)
Frame = +3
Query: 240 TLTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLALSIITGQSTTCQD 419
TL S T T+S P Y + S+ T + + T S T S + QD
Sbjct: 236 TLESSSLTNTVS-PTESTFYETKSSTSSVPTQTIDSSSFTSSTPVSLTSSSTSSSGSSQD 294
Query: 420 ACDVELIPST 449
+ ++ PST
Sbjct: 295 STTIDSTPST 304
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 2.0
Identities = 25/99 (25%), Positives = 40/99 (40%)
Frame = +3
Query: 222 PNSCRPTLTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLALSIITGQ 401
P S LT + TT+ S+P P T T L+ T + S+P T+ ++
Sbjct: 415 PTSSSTPLTTTNCTTSTSVPYTST--PVTSTPLATTNCTT---STSVPYTSTPVTSTPLT 469
Query: 402 STTCQDACDVELIPSTPTRHGRTISTGWLPSTGCTHLAT 518
+T C + + STP +T ST + +T
Sbjct: 470 TTNCTTSTSIP-YTSTPVTSTPLTTTNCTTSTSVPYTST 507
Score = 25.8 bits (54), Expect = 6.0
Identities = 24/88 (27%), Positives = 33/88 (37%)
Frame = +3
Query: 237 PTLTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLALSIITGQSTTCQ 416
PT T S T + LP + + ST PT+T + S ++T
Sbjct: 265 PTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSS 324
Query: 417 DACDVELIPSTPTRHGRTISTGWLPSTG 500
+PST T T ST +P TG
Sbjct: 325 TGTSSSPLPSTST--SCTTSTS-IPPTG 349
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/67 (25%), Positives = 31/67 (46%)
Frame = +3
Query: 297 YPATVTCLSIARSTATPRALSMPTTTLALSIITGQSTTCQDACDVELIPSTPTRHGRTIS 476
Y + + S + S + S+ +++L+ SI G S + +PST + H +IS
Sbjct: 3634 YDLSTSAFSSSSSEPSTLDYSVSSSSLSSSIGVGSSFSSNSKVTSNKVPSTVSPHSSSIS 3693
Query: 477 TGWLPST 497
P+T
Sbjct: 3694 DTKSPAT 3700
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 409 RAKTRATWS*SLRRPQGMAGPSRQA-GCHR 495
R+ ++ +WS LRRP P RQ+ G HR
Sbjct: 244 RSPSKGSWSSILRRPSLTYSPKRQSTGLHR 273
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.6 bits (56), Expect = 3.4
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Frame = +2
Query: 167 SEDIRAEERYRPTRRSVFPELLSTYPYSKSIYDDPIAAAERITVPGYRYLPVHREI---Y 337
S D+ E RR+ P+ + SK+ Y P E I + V + Y
Sbjct: 573 SSDVHKNENAGTARRA--PQS-GAFVASKAKYSSPYDLPEEIVQVAQQKRSVSQNYNRQY 629
Query: 338 GYSPRPIYAHNYPRSL 385
+ PRP N PRSL
Sbjct: 630 SFQPRPATPSNPPRSL 645
>SPAC13G6.06c |||glycine cleavage complex subunit
P|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1017
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 434 VDPFDAHKAWQDHLDRLAAIDRLYPSRYGLYLXD 535
+D D + H D+LAA YPS +G++ D
Sbjct: 691 LDMQDLKEKASKHADKLAAFMVTYPSTFGIFEPD 724
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 25.8 bits (54), Expect = 6.0
Identities = 20/68 (29%), Positives = 24/68 (35%)
Frame = +2
Query: 206 RRSVFPELLSTYPYSKSIYDDPIAAAERITVPGYRYLPVHREIYGYSPRPIYAHNYPRSL 385
RR V+ YP K Y +A + PG R SP A R
Sbjct: 665 RRMVWAWRGEYYPAKKGEYHMIYSALQSERFPGPTPFSPFRSFQELSPSEQAAMVQKRIA 724
Query: 386 DYYRPIYH 409
DY R +YH
Sbjct: 725 DYSRKVYH 732
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 6.0
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Frame = +3
Query: 225 NSCRPTLTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLALSIITGQS 404
+S TLT S +T+ S+P +T + LS + S++T + S ++ ++ S + S
Sbjct: 224 SSSSSTLTSSSLSTS-SIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSS 282
Query: 405 --TTCQDACDVELIPSTPTRHGRTIST 479
+T S+PT TIS+
Sbjct: 283 PTSTSSTISSSSSSSSSPTSTSSTISS 309
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 25.8 bits (54), Expect = 6.0
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Frame = +3
Query: 264 TTLSLPLRGLRYPATVTCLS---IARSTATPRALSMPTTTLALSIITGQSTTCQDACDVE 434
T+ + P G + ++ + LS I+ S++TP S+PT++ LS ++T V
Sbjct: 68 TSENYPYTGSKSLSSSSILSNSTISTSSSTPITASVPTSSSILS-----NSTIPTTSPVP 122
Query: 435 LIPSTPTRHGRTISTGWLPSTGCTHLAT 518
STPT +S +PS+ +T
Sbjct: 123 TTSSTPT-SSSILSNSTIPSSSSISAST 149
>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 25.8 bits (54), Expect = 6.0
Identities = 19/60 (31%), Positives = 24/60 (40%)
Frame = +3
Query: 264 TTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLALSIITGQSTTCQDACDVELIP 443
TT S PL P+ V C IA + ALS+ A G TC+D +P
Sbjct: 82 TTYSYPLISGGAPSAVWCWLIAGAGCMCIALSVAELVSAYPTSGGLYFTCKDLVPARSMP 141
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = +2
Query: 284 ERITVPGYRYLPVHREIYGYSPRPIYAHNYPRSLDYYRPIY 406
++ +V Y P H S RPI +N DY +Y
Sbjct: 875 DKDSVDAYNRFPFHSYFGDKSKRPIETYNKDNFFDYATKLY 915
>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 716
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +2
Query: 536 RAYPITDLTAPLIDPLK--PKSLKXIEYEPDN 625
RAYP D P++D L+ +L+ EY N
Sbjct: 381 RAYPTYDFACPIVDSLEGVTHALRTTEYRDRN 412
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +3
Query: 168 RKTSEPRKGTGQHAAA--FFPNSCRPTLTPSRFT 263
++T+ + GT +A A F PN P TP +FT
Sbjct: 415 KETTGTKLGTKLNAKAISFKPNVAAPVFTPGKFT 448
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,723,720
Number of Sequences: 5004
Number of extensions: 55927
Number of successful extensions: 195
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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