Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0426
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0674 - 21745321-21746223,21746229-21747608 35 0.071
06_01_1181 + 10148653-10149405 33 0.29
07_03_0518 + 19007793-19008722 31 0.88
07_03_0512 - 18954515-18955972 31 1.2
07_03_0514 + 18984375-18985865 29 2.7
12_02_0168 + 14827529-14828050 29 4.7
09_03_0006 + 11426346-11426420,11426733-11427452 29 4.7
08_01_1010 - 10215625-10216335,10216372-10216473 29 4.7
08_02_0058 + 11773402-11773482,11773513-11774197,11774245-11774714 28 6.2
10_08_0739 + 20217842-20218852 28 8.2
04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,962... 28 8.2
03_03_0226 + 15590276-15590469,15590515-15590539,15590865-155910... 28 8.2
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 34.7 bits (76), Expect = 0.071
Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 3/108 (2%)
Frame = +3
Query: 192 GTGQHAAAFFPNSCRPTLTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTT 371
GT + + A PT+ T L + P+T + + STAT + S P T
Sbjct: 473 GTSELSTASTGELPSPTVKIPTTACTGELSTPTSQIPSTASTREL--STATGKIPSTPRT 530
Query: 372 ---TLALSIITGQSTTCQDACDVELIPSTPTRHGRTISTGWLPSTGCT 506
+ A S I T + IPSTP+ + +TG +PST CT
Sbjct: 531 NPLSTATSKIPSTPRTSLLSSSTSKIPSTPSTCELSTATGKIPSTTCT 578
>06_01_1181 + 10148653-10149405
Length = 250
Score = 32.7 bits (71), Expect = 0.29
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 305 YRYLPVHREIYGYSPRPIYAHNYPRSLDYYRPIYHVPRRVRRG 433
+RY+ VH +Y P+ + YP ++ P HV VR G
Sbjct: 155 FRYVQVHHPVYAAPGEPVQGYGYPVAMSSALPAPHVHVGVRGG 197
>07_03_0518 + 19007793-19008722
Length = 309
Score = 31.1 bits (67), Expect = 0.88
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = -1
Query: 442 GINSTSHASWHVVD---WPVIIERARVVVGIDRARGVAVDLAMDRQ 314
G NST + WH V WP+ E+ + R GVAV++ +DR+
Sbjct: 198 GWNSTLESLWHGVPMAPWPLYAEQHLNAFELVRDMGVAVEMEVDRK 243
>07_03_0512 - 18954515-18955972
Length = 485
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = -1
Query: 442 GINSTSHASWH---VVDWPVIIERARVVVGIDRARGVAVDLAMD 320
G NST + WH +V WP+ E+ + R GVAV L +D
Sbjct: 369 GWNSTLESLWHGVPLVPWPLYAEQRLNAFELVRDMGVAVPLGVD 412
>07_03_0514 + 18984375-18985865
Length = 496
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = -1
Query: 442 GINSTSHASWHVVD---WPVIIERARVVVGIDRARGVAVDLAMDRQ 314
G NS + WH V WP+ E+ + R GVAV L +DR+
Sbjct: 381 GWNSVLESLWHGVPMAPWPLYAEQHLNAFELVRDMGVAVPLGVDRE 426
>12_02_0168 + 14827529-14828050
Length = 173
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -3
Query: 506 GTAGRWQPACRDGPAMPCGRRR 441
G AGRW+ CR G + P GRRR
Sbjct: 22 GGAGRWR--CRSGRSAPGGRRR 41
>09_03_0006 + 11426346-11426420,11426733-11427452
Length = 264
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +3
Query: 237 PTLTPSRFTT-TLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLALSIITGQSTTC 413
P L P T T L PA + C + + + P M T ++LS + G + T
Sbjct: 161 PALRPMSLTRLTPFAALSTSTCPAAIACCAASTAVWNPNDRLM--TPMSLSAVFGIAATA 218
Query: 414 QDACDVELIPSTPT 455
+ ++PS+PT
Sbjct: 219 EPRHAPRIVPSSPT 232
>08_01_1010 - 10215625-10216335,10216372-10216473
Length = 270
Score = 28.7 bits (61), Expect = 4.7
Identities = 28/109 (25%), Positives = 40/109 (36%), Gaps = 1/109 (0%)
Frame = +3
Query: 174 TSEPRKGTGQHAAAFFPNSCRPTLTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRA 353
++ PR+ P + R +P +T + P R P R+ +
Sbjct: 76 STPPRRAASPDYTPSTPTTPRRAASPD-YTPSTPTPPRRAASPDYTPSTPPPRAASPDYT 134
Query: 354 LSMPTTTL-ALSIITGQSTTCQDACDVELIPSTPTRHGRTISTGWLPST 497
S PT A S ST + A + PSTPT R S + PST
Sbjct: 135 PSTPTPPRRAASPNYTPSTPQRHAASPDYTPSTPTPPRRAASLDYTPST 183
>08_02_0058 + 11773402-11773482,11773513-11774197,11774245-11774714
Length = 411
Score = 28.3 bits (60), Expect = 6.2
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = -1
Query: 493 DGSQPVEMVLPCLVGVEGINSTSHASWHVVDW 398
D V V C++ + G+ T++ +W +V+W
Sbjct: 279 DNGLMVSRVESCVIKLPGVMGTANETWSIVEW 310
>10_08_0739 + 20217842-20218852
Length = 336
Score = 27.9 bits (59), Expect = 8.2
Identities = 20/72 (27%), Positives = 26/72 (36%)
Frame = +1
Query: 208 PQRFSRTPVDLPLLQVDLRRPYRCR*EDYGTRLPLPACPSRDLRLLPAPYLCPQLPSLSR 387
P S LP + P+R PLP PS L L+P+ P LP L+
Sbjct: 26 PSLISHLGAGLPAFAAGIHCPHR-------VSFPLPTAPSASLLLMPSWSAHPSLPYLAL 78
Query: 388 LLQANLPRAKTR 423
+ P R
Sbjct: 79 KAVTSFPANSPR 90
>04_03_0024 -
9623178-9624001,9624502-9624678,9625144-9625305,
9625520-9626032,9626801-9629153
Length = 1342
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +1
Query: 157 SKRFGRHQSRGKVQANTPQR-FSRTPVDLPLLQV-DLRRPYRCR 282
SKR +HQ+R T +R F R PV LP ++ +R P + +
Sbjct: 759 SKRIYKHQNRNNNNIRTKKRYFLRRPVRLPFKEILGIRIPVKVK 802
>03_03_0226 +
15590276-15590469,15590515-15590539,15590865-15591014,
15591166-15591594
Length = 265
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 357 SMPTTTLALSIITGQSTTCQDACDVELIPSTPTRHGRTISTGW 485
S T+TL+ + T ++ D + L P+T T GR +T W
Sbjct: 209 SPTTSTLSGRVTTTAWSSTSDVAFLPLPPTTSTLSGRVTTTAW 251
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,721,234
Number of Sequences: 37544
Number of extensions: 412735
Number of successful extensions: 1402
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1399
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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