Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0425
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   209   3e-55
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   209   4e-55

>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  209 bits (511), Expect = 3e-55
 Identities = 106/175 (60%), Positives = 122/175 (69%), Gaps = 1/175 (0%)
 Frame = +2

Query: 38  QKLFEVVDEHKLRFFYEKRMGAEVXADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSR 217
           QKL E+ D+ +LR F EKRMG EV  D +G E+ GYV ++ GGNDKQGFPM QGVL   R
Sbjct: 13  QKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQGFPMFQGVLLPHR 72

Query: 218 VRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVXVRKGAQEIPGLTDGNVPRR 397
           VRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL  V++G Q+IPGLTD  VP+R
Sbjct: 73  VRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQDIPGLTDVTVPKR 132

Query: 398 LGPKRASKIRKLFNLS-XXXXXXXXXXXXXLPAKEGKXNAXPXXKAPXIXXLXTP 559
           LGPKRASKIR+ FNLS              +P KEGK    P  KAP I  L TP
Sbjct: 133 LGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK---KPYTKAPKIQRLVTP 184


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  209 bits (510), Expect = 4e-55
 Identities = 105/175 (60%), Positives = 122/175 (69%), Gaps = 1/175 (0%)
 Frame = +2

Query: 38  QKLFEVVDEHKLRFFYEKRMGAEVXADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSR 217
           QKL E+ D+ +LR F EKRMG EV  D +G E+ GYV ++ GGNDKQGFPM QGVL   R
Sbjct: 13  QKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQGFPMFQGVLLPHR 72

Query: 218 VRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVXVRKGAQEIPGLTDGNVPRR 397
           VRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL  +++G Q+IPGLTD  VP+R
Sbjct: 73  VRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQDIPGLTDVTVPKR 132

Query: 398 LGPKRASKIRKLFNLS-XXXXXXXXXXXXXLPAKEGKXNAXPXXKAPXIXXLXTP 559
           LGPKRASKIR+ FNLS              +P KEGK    P  KAP I  L TP
Sbjct: 133 LGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK---KPYTKAPKIQRLVTP 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,546,020
Number of Sequences: 5004
Number of extensions: 43857
Number of successful extensions: 77
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)