Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0425
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560...   187   7e-48
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706...   186   2e-47
03_05_0466 - 24602715-24603964,24605762-24605944,24606381-246072...    29   5.2  
08_01_0377 - 3331696-3332371,3334063-3334472                           28   6.9  
02_05_0956 - 33064104-33066425                                         28   6.9  

>03_03_0207 -
           15455163-15455389,15455623-15455895,15455991-15456099,
           15456186-15456243,15457002-15457066,15457190-15457195
          Length = 245

 Score =  187 bits (456), Expect = 7e-48
 Identities = 99/179 (55%), Positives = 118/179 (65%), Gaps = 4/179 (2%)
 Frame = +2

Query: 35  CQKLFEVVDEHKLRFFYEKRMGAEVXADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNS 214
           CQK  E+ D+ KLR FY+KR+  EV  D LG+E+KGYV ++ GG DKQGFPMKQGVLT+ 
Sbjct: 12  CQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTSG 71

Query: 215 RVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVXVRKGAQEIPGLTDGNV 388
           RVRLL+ +G  C+R   RRDGER+RKSVRGCIV  +LSV+ LV V+KG  ++PGLTD   
Sbjct: 72  RVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGDNDLPGLTDTEK 131

Query: 389 PRRLGPKRASKIRKLFNLS--XXXXXXXXXXXXXLPAKEGKXNAXPXXKAPXIXXLXTP 559
           PR  GPKRASKIRKLFNL+                  K GK       KAP I  L TP
Sbjct: 132 PRMRGPKRASKIRKLFNLAKDDDVRKYVNTYRRTFTTKNGK----KVSKAPKIQRLVTP 186


>07_03_1309 +
           25669394-25669399,25669520-25669584,25670543-25670600,
           25670683-25670791,25670872-25671144,25671348-25671589
          Length = 250

 Score =  186 bits (453), Expect = 2e-47
 Identities = 99/179 (55%), Positives = 117/179 (65%), Gaps = 4/179 (2%)
 Frame = +2

Query: 35  CQKLFEVVDEHKLRFFYEKRMGAEVXADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNS 214
           CQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV ++ GG DKQGFPMKQGVLT  
Sbjct: 12  CQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTAG 71

Query: 215 RVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVXVRKGAQEIPGLTDGNV 388
           RVRLL+ +G  C+R   RRDGER+RKSVRGCIV  +LSV+ LV V+KG  ++PGLTD   
Sbjct: 72  RVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGENDLPGLTDTEK 131

Query: 389 PRRLGPKRASKIRKLFNLS--XXXXXXXXXXXXXLPAKEGKXNAXPXXKAPXIXXLXTP 559
           PR  GPKRASKIRKLFNLS                  K GK       KAP I  L TP
Sbjct: 132 PRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKNGK----KVSKAPKIQRLVTP 186


>03_05_0466 -
           24602715-24603964,24605762-24605944,24606381-24607286,
           24609446-24609516,24609737-24609846,24610073-24610108,
           24610211-24610278,24610655-24610760,24610850-24610997,
           24611091-24611218,24611319-24611454,24611924-24612072
          Length = 1096

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 286 ISSWMYC*RQSLGLG-SCXCAQGCPGNSWID 375
           +S   +C   S G+G SC C QG  GN ++D
Sbjct: 585 VSGNSHCVNSSNGMGYSCSCNQGYEGNPYLD 615


>08_01_0377 - 3331696-3332371,3334063-3334472
          Length = 361

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 21/69 (30%), Positives = 31/69 (44%)
 Frame = +3

Query: 300 VLLTPISRSWLLXLCARVPRKFLD*LMEMXPAV*VPNVLPKSVSCSTLAXKMMYVVMSSN 479
           +L+  I   W    CAR+ +   D L E    V V  VLP+S   +     + +V M   
Sbjct: 260 ILMKWILHDWSDEHCARLLKNCYDALPEHGKVVVVECVLPESSDATAREQGVFHVDMIML 319

Query: 480 ACSPPRKEK 506
           A +P  KE+
Sbjct: 320 AHNPGGKER 328


>02_05_0956 - 33064104-33066425
          Length = 773

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -3

Query: 496 LGGEHAFDDITTYIIXFAKV 437
           +G EHA DD++TYII  A V
Sbjct: 23  VGVEHATDDVSTYIIHVAHV 42


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,843,827
Number of Sequences: 37544
Number of extensions: 360898
Number of successful extensions: 847
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)