Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0425
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)              213   2e-55
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)                   37   0.015
SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)                      29   4.0  

>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
          Length = 212

 Score =  213 bits (519), Expect = 2e-55
 Identities = 102/152 (67%), Positives = 113/152 (74%)
 Frame = +2

Query: 104 EVXADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKR 283
           EV  + LGDEWKGYV R+ GGNDKQGFPMKQG++TN RVRLL+SKGHSCYRPRR GERKR
Sbjct: 2   EVSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKR 61

Query: 284 KSVRGCIVDANLSVLALVXVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSXXXXXX 463
           KSVRGCIVD+ LSVL+LV V+KG Q+IPGLTD  +PRRLGPKR  KIRK+FNLS      
Sbjct: 62  KSVRGCIVDSQLSVLSLVIVKKGEQDIPGLTDNTIPRRLGPKRVGKIRKMFNLSKEDDVR 121

Query: 464 XXXXXXXLPAKEGKXNAXPXXKAPXIXXLXTP 559
                  LP KEGK       KAP I  L TP
Sbjct: 122 QYVIRRPLPEKEGK---KAKSKAPKIQRLVTP 150


>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
          Length = 796

 Score = 37.1 bits (82), Expect = 0.015
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = -3

Query: 244 VAL*HQKTNTAVCQDALFHRESLLVVAASDTKYIAFPFIA*LISXYFGAHALFVK 80
           V L  Q+ + A+  D L H +SL V+  SD + ++ P I   +  Y   H L ++
Sbjct: 252 VTLGEQEADAAIGHDPLLHGKSLFVITTSDPEDVSLPLIPQALPRYLHGHTLVIE 306


>SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)
          Length = 172

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +2

Query: 290 VRGCIVDANLSVLALVXVRKGAQEIPGLTDGNVPRRLGPKRASKIRK 430
           VR C +D   +VLA V  R+ A E  GLT+G V    GP R   +++
Sbjct: 86  VRSCPMDKQSTVLA-VETRE-ACESKGLTEGCVSSAFGPGREEPVQE 130


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,785,513
Number of Sequences: 59808
Number of extensions: 390235
Number of successful extensions: 961
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)