Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0425
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...   218   4e-57
Z50873-2|CAA90759.2|  620|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z50873-1|CAA90760.2|  961|Caenorhabditis elegans Hypothetical pr...    29   3.5  
X92565-1|CAA63315.1|  620|Caenorhabditis elegans LIN-2B protein.       29   3.5  
X92564-1|CAA63314.1|  961|Caenorhabditis elegans LIN-2A protein.       29   3.5  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score =  218 bits (532), Expect = 4e-57
 Identities = 101/136 (74%), Positives = 115/136 (84%)
 Frame = +2

Query: 38  QKLFEVVDEHKLRFFYEKRMGAEVXADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSR 217
           QK FEV +E KLR F+EKRM  EV  D LGDEWKGYV+R+ GGNDKQGFPMKQG+LTN R
Sbjct: 13  QKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQGFPMKQGILTNGR 72

Query: 218 VRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVXVRKGAQEIPGLTDGNVPRR 397
           VRLL+ KG SCYR R++GERKRKSVRGCIVDAN+S L+LV V+KG  EI GLTD  +PR+
Sbjct: 73  VRLLLKKGQSCYRERKNGERKRKSVRGCIVDANMSALSLVIVKKGDGEIEGLTDSVLPRK 132

Query: 398 LGPKRASKIRKLFNLS 445
           LGPKRASKIRKLFNL+
Sbjct: 133 LGPKRASKIRKLFNLT 148


>Z50873-2|CAA90759.2|  620|Caenorhabditis elegans Hypothetical
           protein F17E5.1b protein.
          Length = 620

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 103 GAHALFVKETKLVLVHHFEQLLAXPLPGTKRLPR 2
           GAH +  +  K  L+H      A P+P T R PR
Sbjct: 440 GAHGVGRRHIKNTLIHRHPNRFAYPIPHTTRPPR 473


>Z50873-1|CAA90760.2|  961|Caenorhabditis elegans Hypothetical
           protein F17E5.1a protein.
          Length = 961

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 103 GAHALFVKETKLVLVHHFEQLLAXPLPGTKRLPR 2
           GAH +  +  K  L+H      A P+P T R PR
Sbjct: 781 GAHGVGRRHIKNTLIHRHPNRFAYPIPHTTRPPR 814


>X92565-1|CAA63315.1|  620|Caenorhabditis elegans LIN-2B protein.
          Length = 620

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 103 GAHALFVKETKLVLVHHFEQLLAXPLPGTKRLPR 2
           GAH +  +  K  L+H      A P+P T R PR
Sbjct: 440 GAHGVGRRHIKNTLIHRHPNRFAYPIPHTTRPPR 473


>X92564-1|CAA63314.1|  961|Caenorhabditis elegans LIN-2A protein.
          Length = 961

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 103 GAHALFVKETKLVLVHHFEQLLAXPLPGTKRLPR 2
           GAH +  +  K  L+H      A P+P T R PR
Sbjct: 781 GAHGVGRRHIKNTLIHRHPNRFAYPIPHTTRPPR 814


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,791,016
Number of Sequences: 27780
Number of extensions: 273912
Number of successful extensions: 582
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)