Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0425
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    27   0.25 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    27   0.25 
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          24   1.3  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      24   1.3  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   1.8  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 26.6 bits (56), Expect = 0.25
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 246 EWPFDIRRRTRLFVRTPCFI 187
           EWP  +R+R  LF+   CF+
Sbjct: 406 EWPRLLRKRKELFIAIVCFV 425


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 26.6 bits (56), Expect = 0.25
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 246 EWPFDIRRRTRLFVRTPCFI 187
           EWP  +R+R  LF+   CF+
Sbjct: 459 EWPRLLRKRKELFIAIVCFV 478


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 181 SLLVVAASDTKYIAFPFIA*LISXYF 104
           S+ V+   DTKY+ FP I  +   YF
Sbjct: 145 SIAVLYRPDTKYMKFPAIYEIYPNYF 170


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 181 SLLVVAASDTKYIAFPFIA*LISXYF 104
           S+ V+   DTKY+ FP I  +   YF
Sbjct: 145 SIAVLYRPDTKYMKFPAIYEIYPNYF 170


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = -2

Query: 179 LACRCRQRHEVHSLSIHRLTDQXLLRRP-CAFRKRNEACARPPLRTTSGXPVAGXETFT 6
           ++ R   RH VHSL+   +  + LL+R  C  RK          R  +  P++     T
Sbjct: 52  ISSRRNGRHNVHSLAFGAIQLRQLLKRQLCEKRKEVSIITEDSSRKQTIDPLSSNTQIT 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,689
Number of Sequences: 438
Number of extensions: 3512
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)