Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0425
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso...   184   7e-47
At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)             183   1e-46
At1g67280.1 68414.m07657 lactoylglutathione lyase, putative / gl...    29   3.3  
At2g16390.1 68415.m01876 SNF2 domain-containing protein / helica...    28   7.6  

>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
           protein S6, Arabidopsis thaliana, PID:g2662469
          Length = 250

 Score =  184 bits (447), Expect = 7e-47
 Identities = 89/138 (64%), Positives = 105/138 (76%), Gaps = 2/138 (1%)
 Frame = +2

Query: 35  CQKLFEVVDEHKLRFFYEKRMGAEVXADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNS 214
           CQK  E+ D+ KLR FY+KR+  EV  D LG+E+KGYV ++ GG DKQGFPMKQGVLT  
Sbjct: 12  CQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQGFPMKQGVLTPG 71

Query: 215 RVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVXVRKGAQEIPGLTDGNV 388
           RVRLL+ +G  C+R   RR GER+RKSVRGCIV  +LSVL LV V+KG  ++PGLTD   
Sbjct: 72  RVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDTEK 131

Query: 389 PRRLGPKRASKIRKLFNL 442
           PR  GPKRASKIRKLFNL
Sbjct: 132 PRMRGPKRASKIRKLFNL 149


>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
          Length = 249

 Score =  183 bits (445), Expect = 1e-46
 Identities = 88/138 (63%), Positives = 105/138 (76%), Gaps = 2/138 (1%)
 Frame = +2

Query: 35  CQKLFEVVDEHKLRFFYEKRMGAEVXADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNS 214
           CQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV ++ GG DKQGFPMKQGVLT  
Sbjct: 12  CQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPG 71

Query: 215 RVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVXVRKGAQEIPGLTDGNV 388
           RVRLL+ +G  C+R   RR GER+RKSVRGCIV  +LSVL LV V+KG  ++PGLTD   
Sbjct: 72  RVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGVSDLPGLTDTEK 131

Query: 389 PRRLGPKRASKIRKLFNL 442
           PR  GPKRASKIRKLFNL
Sbjct: 132 PRMRGPKRASKIRKLFNL 149


>At1g67280.1 68414.m07657 lactoylglutathione lyase, putative /
           glyoxalase I, putative similar to putative
           lactoylglutathione lyase SP:Q39366, GI:2494843 from
           [Brassica oleracea]
          Length = 350

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 35  CQKLFEVVDEHKLRFFYEKRMGAEVXADQLGDEWKGYVLRVAGGNDKQGFPM 190
           CQ +  V D  +   FYEK  G E+   +   E+K Y + + G   +  FP+
Sbjct: 220 CQVMLRVGDLDRAIKFYEKAFGMELLRTRDNPEYK-YTIAMMGYGPEDKFPV 270


>At2g16390.1 68415.m01876 SNF2 domain-containing protein / helicase
           domain-containing protein low similarity to RAD54
           [Drosophila melanogaster] GI:1765914; contains Pfam
           profiles PF00271: Helicase conserved C-terminal domain,
           PF00176: SNF2 family N-terminal domain
          Length = 888

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 359 EIPGLTDGNVPRRLGPKRASKIRKL 433
           E+PGL D  V   L PK+ ++++KL
Sbjct: 620 ELPGLADFTVVLNLSPKQLNEVKKL 644


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,184,964
Number of Sequences: 28952
Number of extensions: 261232
Number of successful extensions: 571
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)