Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0422
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0259 + 19494629-19495394,19495408-19495949                       30   2.0  
09_04_0183 + 15389691-15390197,15391259-15391582                       28   8.2  
05_04_0038 + 17403620-17403769,17403975-17404038,17404807-174048...    28   8.2  
01_06_1514 - 37892552-37893074,37893291-37893367,37893471-378935...    28   8.2  

>05_04_0259 + 19494629-19495394,19495408-19495949
          Length = 435

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 70  FRAVMQGSQHVGKGVHTSSVTTE-KNVCYAPFGALQPRATKEGRIKCTLIPGDGVGPE 240
           +   M GS   G  V T  +  + K V +  FGA    ATK+G + C  +   GV PE
Sbjct: 336 YDGTMVGSTRAGPAVPTVELVLQSKAVSWVVFGANSMVATKDGAL-CFGVVDGGVAPE 392


>09_04_0183 + 15389691-15390197,15391259-15391582
          Length = 276

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = -3

Query: 635 DFDAVMIFKHSXTPGTDSCSKAEYXPSVCSVMMXQSTSWCXHFTLGNDFTCTT 477
           ++D    FK   +P    C K    PS C+ +    T+W    T  +D  C T
Sbjct: 154 NWDRTQFFKADLSPLESGCCKP---PSSCNFLYVSGTNWTKVPTNSSDPDCNT 203


>05_04_0038 +
           17403620-17403769,17403975-17404038,17404807-17404865,
           17404981-17405056,17405196-17405267,17405411-17405498,
           17405617-17405872,17405972-17406087,17406757-17406977,
           17407074-17407102,17407192-17407291,17407405-17407492,
           17407640-17407874
          Length = 517

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = +1

Query: 292 FESFFFSEVNPTLSAPLEDVVNSIAVNKICIKGILTTPDF--SHTGELQTLNMXLRXALD 465
           + S + S  N  + APL+D+   IA      K    TP+F   +T + Q L   L    +
Sbjct: 339 YSSVYTSNNNNVVKAPLQDLTADIATLFRATKNDTPTPEFLPGNTVDPQGLENALEYIRE 398

Query: 466 LYANV 480
            Y N+
Sbjct: 399 NYGNL 403


>01_06_1514 -
           37892552-37893074,37893291-37893367,37893471-37893587,
           37893826-37893926,37895077-37895146,37895318-37895415,
           37896326-37896419,37896792-37896882,37897222-37897547,
           37898193-37898278,37899078-37899417
          Length = 640

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 262 VFKAASIPXDFESFFFSEVNPTLSAPLEDVVNSIAVNK 375
           V +++SIP +     +  + PT+ + L   VNS  VN+
Sbjct: 403 VSRSSSIPPNTRDALYQSLPPTVKSSLRSKVNSFVVNE 440


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,484,641
Number of Sequences: 37544
Number of extensions: 363777
Number of successful extensions: 843
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)