Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0422
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40333| Best HMM Match : No HMM Matches (HMM E-Value=.)             109   2e-24
SB_20553| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_31735| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_40333| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score =  109 bits (263), Expect = 2e-24
 Identities = 52/79 (65%), Positives = 60/79 (75%)
 Frame = +1

Query: 460 LDLYANVVHVKSLPNVKCXHXDVDCXIITEQTEGXYSALEHESVPGVXECLKIITASKSE 639
           LDL+ANVVH +SLP +K  H ++D  II EQTEG Y++LEHESVPGV E LKIIT  KS+
Sbjct: 92  LDLFANVVHCRSLPGIKTRHDNIDIVIIREQTEGEYTSLEHESVPGVVEMLKIITRRKSQ 151

Query: 640 RIAKXAFDYTVKMGRKXVT 696
           RIAK AFDY  K  RK VT
Sbjct: 152 RIAKFAFDYATKHNRKKVT 170



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 25/50 (50%), Positives = 30/50 (60%)
 Frame = +1

Query: 121 SSVTTEKNVCYAPFGALQPRATKEGRIKCTLIPGDGVGPELVYAVQEVFK 270
           S+ T E +   APFG         GR   TLIPGDGVGPELV  V+++FK
Sbjct: 49  STTTEESDDLTAPFG---------GRHTVTLIPGDGVGPELVNCVKQMFK 89


>SB_20553| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 445

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 262 VFKAASIPXDFESFFFSEVNPTLSAPLEDV 351
           VFK A+ P  F  F   E+NPTL A   D+
Sbjct: 216 VFKIANCPRAFVDFSKGEINPTLEARRSDL 245


>SB_31735| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 382

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -2

Query: 156 CITYIFLRCYRTCVYTLSNMLRSLHNSSKNIP 61
           C+ ++F+  YR   + L  +LRS H++ +NIP
Sbjct: 315 CLYFVFIENYR---HGLRRVLRSAHDARRNIP 343


>SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2142

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
 Frame = -2

Query: 357 VYDVFEWCTKCWIHFRKEKGFKVXWNAGRLENFLYSVDKLGSYTIPRNQGAFDTTF--LC 184
           +Y  F     CW+HF+K+K  +         +F  + D L    +  N+G  D  F    
Sbjct: 46  MYVRFGGTASCWMHFKKDKALE----HKNFTDFTITPDDLERIAMIGNKGGVDVLFGLNA 101

Query: 183 CPRLQGSKWCIT 148
           C R     W  T
Sbjct: 102 CLRNSDGTWNYT 113


>SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3824

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +1

Query: 109 GVHTSSVTTEKNVCYAPFGALQPRATKEGRIKC---TLIPGDGVGPELVY 249
           G H SS T+E    Y P G+  P  T+ GRI     +++   G+  +L Y
Sbjct: 141 GFHASSATSEVRTFYIPEGS--PTGTEVGRIPVRVQSILLASGIPADLEY 188


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,381,726
Number of Sequences: 59808
Number of extensions: 426749
Number of successful extensions: 999
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)