Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0420
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 88 1e-18
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac... 31 0.23
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 28 1.2
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 28 1.2
SPBC21B10.13c |||transcription factor, homeobox type |Schizosacc... 28 1.6
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 27 3.8
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 26 5.0
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 26 6.6
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 26 6.6
SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomy... 26 6.6
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 26 6.6
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 26 6.6
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual 25 8.7
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 25 8.7
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c... 25 8.7
SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation... 25 8.7
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 88.2 bits (209), Expect = 1e-18
Identities = 54/179 (30%), Positives = 97/179 (54%), Gaps = 4/179 (2%)
Frame = +1
Query: 112 MDVAELLTFKPTP-TPKRPNEDESDEEDQAKSAKIRRTTKLKQEPVHLSKNMLKE-PSIT 285
MDV + FK T T K+ N +E+D + A S + +E + + S
Sbjct: 1 MDVDSI--FKNTEETNKKRNPEEADSLEPASSRRRLAEENSDEENEEFDEEGGRFFGSGL 58
Query: 286 DKEREDILKFVATEVTEGEV--LDETTVKKLVLNFEKKALRNREMRIKFPDQPDKFMDSE 459
K + +L F+ + + E L T +K++V+ EK N+E+RIK+ P +F++SE
Sbjct: 59 KKSEKTVLDFLDEQEAQEEPASLTPTELKRMVVRLEKTINNNQELRIKYSTSPQRFIESE 118
Query: 460 IDLHDALQDLSAVATVPDQYPLLVELKCVNSLLELLSHDNTDVSTKVVQLLQEMTDVDI 636
DL ++ + ++ P P+ ++L CV++ LEL++H+N D++ V++LL E+TD D+
Sbjct: 119 ADLDLEIRSFNVLSEYPILIPIFLKLDCVSTFLELMNHENADITITVLELLIELTDEDV 177
>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 483
Score = 30.7 bits (66), Expect = 0.23
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +1
Query: 205 AKIRRTTKLKQEPVHLSKNM-LKEPSITDKEREDILKFVATEVTEGEVLDETTVKKLVLN 381
AK+ RT K P H NM P++T K + ++ G+VL E K ++
Sbjct: 39 AKLARTYATKNYPAHTVINMPALSPTMTTGNIGAFQKKIGDKIEPGDVLCEIETDKAQID 98
Query: 382 FEKK 393
FE++
Sbjct: 99 FEQQ 102
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 103 KQKMDVAELLTFKPTPTPKRPNEDESDEEDQAKSAKIRRTTKL 231
K+++D+ KPT T KR NED ++ + ++R +L
Sbjct: 156 KKELDLQMDAVLKPTRTKKRSNEDNLEQMADDEVLRLREQMRL 198
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 28.3 bits (60), Expect = 1.2
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Frame = +1
Query: 130 LTFKPTPTPKRPNEDES----DEEDQAKSAKIRRTTKLKQEPVHLSKNMLKEPSITDKER 297
+TF P P+ P ED S E + S KI T ++ P L KE + +
Sbjct: 404 ITFSWEPIPENPEEDSSLEVFSEGNPIPSTKI--LTFYRKAPFKLLAAYSKEAQLPGSIK 461
Query: 298 EDILKFVATEVTEGEVLDETTVK 366
++I +++ +V + D + VK
Sbjct: 462 QNIAQYLINDVVPNKDGDLSIVK 484
>SPBC21B10.13c |||transcription factor, homeobox type
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 201
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = +1
Query: 166 NEDESDEEDQAKSAKIRRTTKLKQEPVHLSKNMLKEPSITDKEREDILKFVATEVTEGEV 345
N + + ED+ K RR E L + LK P + ER+++ K + + +T E+
Sbjct: 20 NNEAKNHEDEETHQKKRRRRTTDAEATLLEQYFLKTPKPSLIERQELSKKLKSSMTPREL 79
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 26.6 bits (56), Expect = 3.8
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +1
Query: 514 QYPLLVELKCVNSLLELLSHDNTDVSTKVVQLLQEMTDVDILHESE 651
+YP +K + S ELL HD+ VS+ + D DIL E
Sbjct: 213 KYPSF-PIKMLPSQAELLMHDHCHVSSDYTHDIAHALDRDILERDE 257
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 26.2 bits (55), Expect = 5.0
Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Frame = +1
Query: 172 DESDEEDQAKSAKIRRTTKLKQEPVHLSKNMLKEPSITDKEREDILKFV--ATEVTEGEV 345
+E + + +I+R TK +Q+ LSK ++K+ ++ K++ED+ V A + GE+
Sbjct: 264 EEEYVPEMERMKEIQRQTKERQKEAQLSK-LMKDMHVS-KDKEDVGLTVSDAEDEYNGEL 321
Query: 346 LD 351
+D
Sbjct: 322 VD 323
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/43 (23%), Positives = 26/43 (60%)
Frame = +1
Query: 205 AKIRRTTKLKQEPVHLSKNMLKEPSITDKEREDILKFVATEVT 333
+ ++ ++K+E ++ +++KE S D+E + LK+ + +T
Sbjct: 232 SSLKTAERIKEECCYVCPDIVKEFSRFDREPDRYLKYASESIT 274
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 6.6
Identities = 21/75 (28%), Positives = 39/75 (52%)
Frame = +1
Query: 88 LPFRLKQKMDVAELLTFKPTPTPKRPNEDESDEEDQAKSAKIRRTTKLKQEPVHLSKNML 267
LP RL + + E + P P +P +E+D E K+ ++R + +++ PV ++++
Sbjct: 555 LPERLLLEEEDEEPQGYSPNPQKPKPAMEENDAE---KTKRLR--SLIEKIPVE-AESLW 608
Query: 268 KEPSITDKEREDILK 312
P K ED+LK
Sbjct: 609 ALPIDWSKVTEDLLK 623
>SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 333
Score = 25.8 bits (54), Expect = 6.6
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Frame = +1
Query: 193 QAKSAKIRRTTKLKQEPVHLSKNMLKEPSITDKEREDILKFVATEVTEGEVLDETTVKKL 372
+A AK+R L P MLK +K R++++K + + + +KK
Sbjct: 151 KAAFAKLREANVLISRPHDYFAEMLKSDDHMEKVRQELIKEATAKKLSQQAKKQRELKKF 210
Query: 373 --VLNFEKKALRNREMR 417
+ K+ R RE +
Sbjct: 211 GKQVQLAKQEERQREKK 227
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 645 LMEYVNICHFL*QLNNFGGNISII 574
L ++ +C +L +LNNF SII
Sbjct: 734 LAYFIQVCDYLRELNNFASLFSII 757
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.8 bits (54), Expect = 6.6
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -3
Query: 538 SIPQAEDTGLXLLLQHLDPVMHH 470
+I ED G ++L+H D +MH+
Sbjct: 640 TIAMGEDIGAEMVLRHFDHMMHY 662
>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 408
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 121 AELLTFKPTPTPKRPNEDESDEEDQAKSAKIR 216
AE L K + N+D DE+D K +K+R
Sbjct: 95 AERLAHKGLRNKEVLNDDSDDEDDNGKYSKLR 126
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +1
Query: 424 FPDQPDKFMDSEIDLHDALQDLSAVATVPDQYPLLVEL 537
F +P K ++S+++LH++ L A++ + P+L +L
Sbjct: 1050 FCSEPQKVVNSQLELHNSAYSLDAIS--QNLLPMLKDL 1085
>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
catalytic subunit|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1018
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Frame = +1
Query: 136 FKPTPTPKRPNEDESDEEDQAKSAKIRRTTKLKQEP--VHLSKNMLKE 273
FK R E+ E+D + S LKQEP H S N LK+
Sbjct: 268 FKARKAYIRSQSTETSEDDDSSSFDDDYQNYLKQEPWLAHSSVNSLKD 315
>SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation
factor eIF2 beta subunit|Schizosaccharomyces pombe|chr
1|||Manual
Length = 321
Score = 25.4 bits (53), Expect = 8.7
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +1
Query: 286 DKEREDILKFVATEVTEGEVLDETTVKKLVLNFEKK 393
D ER+ K + T VTEGEV DE +K + + +KK
Sbjct: 54 DSERKSSAKDLTTPVTEGEV-DE--LKDMFSSMKKK 86
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,792,748
Number of Sequences: 5004
Number of extensions: 54264
Number of successful extensions: 194
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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