Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0420
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39225| Best HMM Match : NIF (HMM E-Value=0) 154 6e-38
SB_35592| Best HMM Match : zf-CCHC (HMM E-Value=0.0087) 33 0.25
SB_5034| Best HMM Match : Extensin_2 (HMM E-Value=0.0055) 32 0.43
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 31 0.76
SB_54391| Best HMM Match : MarR (HMM E-Value=0.95) 31 1.00
SB_49258| Best HMM Match : Herpes_UL6 (HMM E-Value=0.18) 31 1.00
SB_31755| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.00
SB_16625| Best HMM Match : Death (HMM E-Value=1.5) 31 1.00
SB_52106| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0098) 30 1.7
SB_8304| Best HMM Match : PLAT (HMM E-Value=0) 30 1.7
SB_51968| Best HMM Match : PT (HMM E-Value=0.54) 30 2.3
SB_7120| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_35674| Best HMM Match : SH2 (HMM E-Value=0) 29 5.3
SB_45177| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_45459| Best HMM Match : RVT_1 (HMM E-Value=6e-36) 28 9.3
SB_38249| Best HMM Match : HA2 (HMM E-Value=1.6e-26) 28 9.3
SB_15535| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_59447| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_18590| Best HMM Match : FYVE (HMM E-Value=8.8e-29) 28 9.3
>SB_39225| Best HMM Match : NIF (HMM E-Value=0)
Length = 1772
Score = 154 bits (374), Expect = 6e-38
Identities = 88/224 (39%), Positives = 133/224 (59%), Gaps = 3/224 (1%)
Frame = +1
Query: 88 LPFRLKQKMDVAELLTFKPTPTPKRPNEDESDEEDQAKSAKIRRTTKLKQEPVHLSKNML 267
+P L+ + ++ L +P K + +ED+ + T+ K++P+ + +
Sbjct: 276 IPVVLEHRKNIG-LRIVQPDKGGKNKRKSSGHDEDEEE-------TQRKKKPLPIQEEFS 327
Query: 268 KEPSITDKEREDILKFVATEVTEGEVLDETTVKKLVLNFEKKALRNREMRIKFPDQPDKF 447
+E +T++ERE IL+ V E EGE LD + VKK++L FEKK +N+EMRIK+PD P+KF
Sbjct: 328 RE--LTEEERERILEMVENE-PEGEALDASAVKKMLLAFEKKVTKNQEMRIKYPDNPEKF 384
Query: 448 MDSEIDLHDALQDLSAVATVPDQYPLLVELKCVNSLLELLSHDNT---DVSTKVVQLLQE 618
M+SE+DL++ +Q L +ATVP+ Y +V+L VN++L L+SHDNT D+S V+ LLQE
Sbjct: 385 MESELDLNEEVQKLHVLATVPEMYHSIVDLNAVNTMLGLISHDNTVLSDISIAVIDLLQE 444
Query: 619 MTDVDILHESEEXAEDXXXXXXXXXXXXXXXXXXTRLDXQVPDE 750
MTDVD L+ES+E A RLD V +E
Sbjct: 445 MTDVDTLNESKEGASALIDALLEGQVIALLVQNLERLDESVKEE 488
>SB_35592| Best HMM Match : zf-CCHC (HMM E-Value=0.0087)
Length = 556
Score = 33.1 bits (72), Expect = 0.25
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +1
Query: 160 RPNEDESDEEDQAKSAKIRRTTKLKQEPVHLSKNMLKEPSITDKEREDILKFV 318
R ED + E + + A ++ QE N LK+ +T+KERE++LK +
Sbjct: 380 REVEDAAQREKEKRKAIEADMAQMVQENTSKIVNKLKKKKLTEKEREELLKLL 432
>SB_5034| Best HMM Match : Extensin_2 (HMM E-Value=0.0055)
Length = 695
Score = 32.3 bits (70), Expect = 0.43
Identities = 25/88 (28%), Positives = 45/88 (51%)
Frame = +1
Query: 277 SITDKEREDILKFVATEVTEGEVLDETTVKKLVLNFEKKALRNREMRIKFPDQPDKFMDS 456
SI +E+ED+ ++ +GEVLD+ + + + N +KA + M + D +DS
Sbjct: 21 SIDLEEQEDLY----VDMDKGEVLDDDGLFEAMCNNAQKAA-SLAMGKRRQDVDQLTLDS 75
Query: 457 EIDLHDALQDLSAVATVPDQYPLLVELK 540
D+H+ L + VA D + V++K
Sbjct: 76 YDDIHEVLPSNTQVAATLDTDDMYVDMK 103
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 31.5 bits (68), Expect = 0.76
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 142 PTPTPKRPNEDESDEEDQAKSAKIRRTTKLKQEPVHLSKNMLKE 273
PTP P P E + E+ + K K + T+ + PV +N K+
Sbjct: 686 PTPEPSLPTEKKKKEKREKKERKREKKTRRARTPVEEPENFEKD 729
>SB_54391| Best HMM Match : MarR (HMM E-Value=0.95)
Length = 837
Score = 31.1 bits (67), Expect = 1.00
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +1
Query: 160 RPNEDESDEEDQAKSAKIRRTTKLKQEPVHLSKNMLKEPSITDKEREDILKFV 318
R ED + E + + A ++ QE + LK+ +T+KERE++LK +
Sbjct: 193 REVEDAAQREKEKRKAIEADMAQMVQENTFKIVDKLKKKKLTEKEREELLKLL 245
>SB_49258| Best HMM Match : Herpes_UL6 (HMM E-Value=0.18)
Length = 899
Score = 31.1 bits (67), Expect = 1.00
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +1
Query: 160 RPNEDESDEEDQAKSAKIRRTTKLKQEPVHLSKNMLKEPSITDKEREDILKFV 318
R ED + E + + A ++ QE + LK+ +T+KERE++LK +
Sbjct: 74 REVEDAAQREKEKRKAIEADMAQMVQENTFKIVDKLKKKKLTEKEREELLKLL 126
>SB_31755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 641
Score = 31.1 bits (67), Expect = 1.00
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +1
Query: 160 RPNEDESDEEDQAKSAKIRRTTKLKQEPVHLSKNMLKEPSITDKEREDILKFV 318
R ED + E + + A ++ QE + LK+ +T+KERE++LK +
Sbjct: 74 REVEDAAQREKEKRKAIEADMAQMVQENTFKIVDKLKKKKLTEKEREELLKLL 126
>SB_16625| Best HMM Match : Death (HMM E-Value=1.5)
Length = 528
Score = 31.1 bits (67), Expect = 1.00
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +1
Query: 160 RPNEDESDEEDQAKSAKIRRTTKLKQEPVHLSKNMLKEPSITDKEREDILKFV 318
R ED + E + + A ++ QE + LK+ +T+KERE++LK +
Sbjct: 2 REVEDAAQREKEKRKAIEADMAQMVQENTFKIVDKLKKKELTEKEREELLKLL 54
>SB_52106| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0098)
Length = 1177
Score = 30.3 bits (65), Expect = 1.7
Identities = 25/101 (24%), Positives = 48/101 (47%)
Frame = +1
Query: 112 MDVAELLTFKPTPTPKRPNEDESDEEDQAKSAKIRRTTKLKQEPVHLSKNMLKEPSITDK 291
+D E + P P+ NE + + KSA+ + K+E +K KE +
Sbjct: 24 LDSGETVVVDPE-VPQVANEVKRSSSVRKKSAQ-EEGNRGKEEKKKENKKKEKEKDEQNI 81
Query: 292 EREDILKFVATEVTEGEVLDETTVKKLVLNFEKKALRNREM 414
E E++LK VA+ + + + E ++ N E KA++ +++
Sbjct: 82 EVENVLKEVASLKNDLQSMGEQLEREKAHNAELKAIKTQQI 122
>SB_8304| Best HMM Match : PLAT (HMM E-Value=0)
Length = 1182
Score = 30.3 bits (65), Expect = 1.7
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Frame = +1
Query: 169 EDESDEEDQAKSAKIRRTTKLKQEPVHL----SKNMLKEPSITDKEREDILKFVATEVTE 336
ED++DE + + +I+ + K E HL + KE + KE E+ + A E
Sbjct: 889 EDDTDEFQRIMT-EIKMRAEKKDEERHLREEEEERQRKEAAKGKKEEEEKKEKEAEERRR 947
Query: 337 GEVLDETTVKKLVLNFEKKALRNREMR 417
E DE +KK KKA++ R+ R
Sbjct: 948 AE--DEERIKKQAEKDRKKAIKKRKRR 972
>SB_51968| Best HMM Match : PT (HMM E-Value=0.54)
Length = 514
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +1
Query: 139 KPTPTPKRPNEDESDEEDQAKSAKIRRT--TKLKQEPVHLSKNMLKEPSITDKERED 303
K T P P E+E +EE++ + K + T +K+ P + +P + + E E+
Sbjct: 427 KKTTKPLLPEEEEEEEEEERPTPKPTKAKPTTIKRRPTEIPTKKPTKPLLPEGEGEE 483
Score = 27.9 bits (59), Expect = 9.3
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +1
Query: 133 TFKPTPTPKRP--NEDESDEEDQAKSAKIRRTTKLKQEPVHLSKNMLKEPSITDKEREDI 306
T +PT P +P E+E +EE++ + R TK K P + + + P T K + +
Sbjct: 298 TERPTKKPTKPLLPEEEEEEEEEEEERPTPRPTKAK--PTAIIRKPTERP--TKKPTKPL 353
Query: 307 LKFVATEVTE 336
L V E E
Sbjct: 354 LPEVEPEEEE 363
>SB_7120| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 559
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/71 (26%), Positives = 36/71 (50%)
Frame = +1
Query: 157 KRPNEDESDEEDQAKSAKIRRTTKLKQEPVHLSKNMLKEPSITDKEREDILKFVATEVTE 336
K+ E+E ++E +++ K +RT+ + E + + LK+ K+ ++ ATE +
Sbjct: 477 KKEAEEEEEKEPKSEKKKRKRTSDNESEKEETTPSKLKKSKKDKKKAKE-----ATEEDD 531
Query: 337 GEVLDETTVKK 369
GE E KK
Sbjct: 532 GEEKKEKKKKK 542
>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1789
Score = 28.7 bits (61), Expect = 5.3
Identities = 41/177 (23%), Positives = 70/177 (39%), Gaps = 1/177 (0%)
Frame = +1
Query: 139 KPTPTPKRPNEDESDEEDQAKSAKIR-RTTKLKQEPVHLSKNMLKEPSITDKEREDILKF 315
KP+P+PK N+ ES E+ + +S K + + K K E K+ ++K++ + K
Sbjct: 1496 KPSPSPKTANKSES-EKGKGESEKDKGESEKDKGESEKDKGESEKDKGESEKDKGESEKE 1554
Query: 316 VATEVTEGEVLDETTVKKLVLNFEKKALRNREMRIKFPDQPDKFMDSEIDLHDALQDLSA 495
E E+ +K EK + K + +K + + D ++ S
Sbjct: 1555 KCQSEKE---KCESEKEKCESEKEKCESEKKVEESKDENPEEKIEEKKDDTASEKKESSE 1611
Query: 496 VATVPDQYPLLVELKCVNSLLELLSHDNTDVSTKVVQLLQEMTDVDILHESEEXAED 666
D VE K S+ + H+ TDV + D+ ES + AED
Sbjct: 1612 EKMEVDGEEQKVE-KSPESVDKTEGHERTDVEDDEKKADDSNEDIGKKDESRDQAED 1667
>SB_35674| Best HMM Match : SH2 (HMM E-Value=0)
Length = 871
Score = 28.7 bits (61), Expect = 5.3
Identities = 41/177 (23%), Positives = 70/177 (39%), Gaps = 1/177 (0%)
Frame = +1
Query: 139 KPTPTPKRPNEDESDEEDQAKSAKIR-RTTKLKQEPVHLSKNMLKEPSITDKEREDILKF 315
KP+P+PK N+ ES E+ + +S K + + K K E K+ ++K++ + K
Sbjct: 75 KPSPSPKTANKSES-EKGKGESEKDKGESEKDKGESEKDKGESEKDKGESEKDKGESEKE 133
Query: 316 VATEVTEGEVLDETTVKKLVLNFEKKALRNREMRIKFPDQPDKFMDSEIDLHDALQDLSA 495
E E+ +K EK + K + +K + + D ++ S
Sbjct: 134 KCQSEKE---KCESEKEKCESEKEKCESEKKVEESKDENPEEKIEEKKDDTASEKKESSE 190
Query: 496 VATVPDQYPLLVELKCVNSLLELLSHDNTDVSTKVVQLLQEMTDVDILHESEEXAED 666
D VE K S+ + H+ TDV + D+ ES + AED
Sbjct: 191 EKMEVDGEEQKVE-KSPESVDKTEGHERTDVEDDEKKADDSNEDIGKKDESRDQAED 246
>SB_45177| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 863
Score = 28.3 bits (60), Expect = 7.0
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 6/94 (6%)
Frame = +1
Query: 160 RPNEDESDEEDQAKSAKIRRTTKLKQEPVHLSKNMLKEPSITDKEREDILKFVATE---V 330
R ED + E + + ++ QE + LKE +T+ ERE++L+ + +
Sbjct: 133 REAEDAAQREKEKRKVIEAALAQMIQENTSKFVDKLKEKELTESEREELLQLLVAHHKVL 192
Query: 331 TEGEVLDETTVKKLVLNFEKKA---LRNREMRIK 423
E E +++ L F K L N M +K
Sbjct: 193 LENVSCFEDSLRDKELGFLKNIVHDLNNSVMNVK 226
>SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 950
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +1
Query: 139 KPTPTPKRPN--EDESDEEDQAKSAKIRRTTKLKQEPVHLSKNMLKEPSITDKERE 300
+P P K+P E+ES+EE + +S + T K+ ++ + S+ E E
Sbjct: 634 EPLPRTKKPEKEEEESEEESEEESEEEEETEKVNKDALKAKATEKSNDSLCLSEEE 689
Score = 27.9 bits (59), Expect = 9.3
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Frame = +1
Query: 157 KRPNEDESDEEDQAKSAKIRRTTKLKQEPVHLSKNMLKEPSITDKEREDILKFVATEVTE 336
K+ +EDE EED K+ K + T K +P K KE +++ E+ K + +
Sbjct: 865 KKDDEDEEAEEDGEKTKKGK--TDKKDKPKEKKKKSGKEDEDEEEDEEEENK--DGDNID 920
Query: 337 GEVLDETTV----KKLVLNFEKKA 396
+ ++TTV KK EKK+
Sbjct: 921 ADKKEDTTVAEGDKKAAAKKEKKS 944
>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3160
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 596 LVETSVLSCDSNSNNEFTHFNSTSRG 519
+++ L+ S S+N+FTH NST G
Sbjct: 2763 VMQAKTLALRSQSSNDFTHLNSTHLG 2788
>SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1411
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/64 (29%), Positives = 35/64 (54%)
Frame = +1
Query: 289 KEREDILKFVATEVTEGEVLDETTVKKLVLNFEKKALRNREMRIKFPDQPDKFMDSEIDL 468
++ ++ ++F E + E L+E K +LN E ALR + K ++PD+ D E++
Sbjct: 854 EQEQEFMRFRLREGEKKEQLEERY--KQLLN-EYIALRKEVIEAKKAEKPDREKDEELNR 910
Query: 469 HDAL 480
+AL
Sbjct: 911 KEAL 914
>SB_45459| Best HMM Match : RVT_1 (HMM E-Value=6e-36)
Length = 1346
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -3
Query: 613 VAVEQLWWKHQYYHVIVILIMSSHTSI 533
+AV ++W K YH++V LI++S T I
Sbjct: 453 IAVNRVWRKKWRYHLVVNLIITSLTII 479
>SB_38249| Best HMM Match : HA2 (HMM E-Value=1.6e-26)
Length = 355
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 115 DVAELLTFKPTPTPKRPNEDESDEEDQA 198
DV ++L F P K+ +E+DE+D+A
Sbjct: 6 DVIQMLGFVPPLPEKKKKREENDEDDEA 33
>SB_15535| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 837
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = +1
Query: 154 PKRPNEDESDEEDQAKSAKIRRTTKLKQEPVHLSKNMLKEPS---ITDKEREDILKFVAT 324
PK+P E S+++ AK K + K +E N +P+ + K EDI + ++
Sbjct: 55 PKKPEESASNDQKTAKCRKHEPSAKSCEEANKYFNNPNYDPTPRRCSTKNNEDICQVISN 114
Query: 325 EVTE 336
+E
Sbjct: 115 SSSE 118
>SB_59447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1094
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 169 EDESDEEDQAKSAKIRRTTKLKQEPVHLSKNMLKEPSITDKERE 300
E + D+ +SA+I+ T + PVH +L+ TD+ R+
Sbjct: 1041 EVKPDDRGLVRSARIKTATTTLERPVHKLVLLLEHEDSTDESRK 1084
>SB_18590| Best HMM Match : FYVE (HMM E-Value=8.8e-29)
Length = 551
Score = 27.9 bits (59), Expect = 9.3
Identities = 33/159 (20%), Positives = 75/159 (47%), Gaps = 5/159 (3%)
Frame = +1
Query: 205 AKIRRTTKLKQEPVHLSKNMLKEPSITDKEREDILKFVATEVT---EG-EVLDETTVKKL 372
+++ T K +E + SKN+ + ++KE +D + + TE++ EG + L K++
Sbjct: 10 SELMTTLKNVKEKLEESKNLYAKKLESEKELQDKINELNTEISSLQEGMQELGTIAEKEI 69
Query: 373 VLNFEKKALRNREMRIKFPDQPDKFMDSEIDLHDALQDLSAVATVPDQY-PLLVELKCVN 549
L+ +K L +E ++ + + +++E+ ++ + Q +LK V+
Sbjct: 70 SLDEMQKCLEEKEDKLTQLQRRVEVLEAELK-----KECESCKNYESQLCRTQTQLKTVH 124
Query: 550 SLLELLSHDNTDVSTKVVQLLQEMTDVDILHESEEXAED 666
L+ + NT + T+V+ + E+ + ES +D
Sbjct: 125 FLVVYVQVKNT-LETQVMNIENELQSTRVTLESVTSDKD 162
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,193,464
Number of Sequences: 59808
Number of extensions: 379497
Number of successful extensions: 1933
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1917
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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