Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0419
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0438 - 18200329-18200430,18201203-18201335,18201964-182020... 116 2e-26
10_08_1034 + 22461397-22461702,22462311-22462524,22464936-224649... 30 2.3
10_08_0985 - 22042801-22042963,22043019-22043138,22043261-220435... 30 2.3
12_01_0227 - 1718726-1721183,1721804-1721957,1722090-1722165,172... 29 3.9
11_01_0229 - 1771701-1774164,1774694-1774847,1774980-1775055,177... 29 3.9
01_06_1022 + 33887089-33888411 29 3.9
07_03_0270 + 16094334-16094539,16095067-16095177,16095431-16095896 29 5.2
04_04_0076 + 22558105-22558261,22558356-22558405,22559837-225600... 28 6.9
>07_03_0438 -
18200329-18200430,18201203-18201335,18201964-18202034,
18202377-18202466,18203200-18203288,18203886-18203961,
18204094-18204264
Length = 243
Score = 116 bits (280), Expect = 2e-26
Identities = 70/203 (34%), Positives = 105/203 (51%), Gaps = 3/203 (1%)
Frame = +1
Query: 52 AKGSACAELIKQVLEA---PGVHVFGELLEMPNIKELESGPYATHLKTLNLFAYGTYKDY 222
A S+ +L VLEA P + F ELL +P + +L YA+ L L LFAYGT KDY
Sbjct: 22 ALSSSAPQLAALVLEATSHPALFAFSELLSLPALSKLTGTQYASSLDVLRLFAYGTLKDY 81
Query: 223 IENKSDYLELTTVQCKKLQHLTIATLATQEKCIPYSVLLEELDIKNVRDLEDLIIEAIYA 402
N + L Q +KL+ L++ TLA K +PY L++ELD+ NVR+LED +I
Sbjct: 82 KSNSGNLPALLPDQVRKLKQLSVLTLAESTKVLPYDQLMQELDVSNVRELEDFLIN---- 137
Query: 403 DIIHGKLDQECKRVEVDVALGRXARLEDAASIADVLADWCNACEAVLNSVDQHIQRANHQ 582
EC V A GR + ++ D L+DW + +L+ + + I+ A+
Sbjct: 138 ---------ECM-YSVQFATGRDLTPDQLNNMIDTLSDWLGTSDNLLHQIQEKIKWADTM 187
Query: 583 KQXAIRHQQGIEQKILYXKKTLK 651
+ +HQ+ E K+ KK++K
Sbjct: 188 SEVNKKHQKEFEDKVEEAKKSIK 210
>10_08_1034 +
22461397-22461702,22462311-22462524,22464936-22464997,
22465035-22465381,22465495-22465591
Length = 341
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 286 SDAVISCTGLWLILNSPICSQCSPYMC 206
+DAV C+GL+ I N+P SQ + C
Sbjct: 74 ADAVHGCSGLFAIFNTPSSSQSQSHSC 100
>10_08_0985 -
22042801-22042963,22043019-22043138,22043261-22043562,
22044055-22044351,22044448-22044556,22044826-22045358,
22045446-22045644,22045741-22045865,22045937-22046020,
22046093-22046221,22046337-22046465,22046593-22046739,
22047106-22047346,22047859-22047980
Length = 899
Score = 29.9 bits (64), Expect = 2.3
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Frame = +1
Query: 163 PYATHLKTLNLFAYGTYKDYIENKSDYLELTT---VQCKKLQHLTIATLATQEKCIPYSV 333
P L+ NLF+ K Y +N +YL + + KK + +E+ IP V
Sbjct: 399 PGKEELRQKNLFSVSDCKMYWQNSGEYLAVQVDRYTKTKKSTYTGFELFRIKERDIPIEV 458
Query: 334 LLEELDIKN 360
L ELD KN
Sbjct: 459 L--ELDNKN 465
>12_01_0227 - 1718726-1721183,1721804-1721957,1722090-1722165,
1722327-1722485,1722552-1722662,1722791-1722841,
1722948-1723192,1723745-1725278
Length = 1595
Score = 29.1 bits (62), Expect = 3.9
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -3
Query: 346 IPQVTHCKGYISLVLQVLQWSDA 278
+P+VTHC + L+++ +W DA
Sbjct: 940 LPEVTHCNRLLKLLVEQRRWDDA 962
>11_01_0229 -
1771701-1774164,1774694-1774847,1774980-1775055,
1775439-1775477,1778516-1778674,1778741-1778851,
1779014-1779064,1779173-1779256
Length = 1045
Score = 29.1 bits (62), Expect = 3.9
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -3
Query: 346 IPQVTHCKGYISLVLQVLQWSDA 278
+P+VTHC + L+++ +W DA
Sbjct: 389 LPEVTHCNRLLKLLVEQRRWDDA 411
>01_06_1022 + 33887089-33888411
Length = 440
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 492 SCIFKPRXSAKGHVHFHTFTFLVQLAVNYV 403
+C F A+G F T TF QLA +YV
Sbjct: 152 ACYFSHSRVAEGLAFFRTMTFTTQLAADYV 181
>07_03_0270 + 16094334-16094539,16095067-16095177,16095431-16095896
Length = 260
Score = 28.7 bits (61), Expect = 5.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 283 DAVISCTGLWLILNSPICSQ 224
D +++CT WL + SP CSQ
Sbjct: 190 DMMMACTPSWLFIPSPACSQ 209
>04_04_0076 +
22558105-22558261,22558356-22558405,22559837-22560044,
22560112-22560237,22560469-22560567,22560729-22561405,
22561483-22561731,22561808-22561936,22562021-22562089,
22562183-22562256,22563086-22563098,22563361-22563468,
22563541-22563651,22563725-22563811,22564043-22564068,
22564840-22564906,22565123-22565212,22565295-22565387,
22565515-22565604,22565699-22565761,22566349-22566447
Length = 894
Score = 28.3 bits (60), Expect = 6.9
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Frame = +1
Query: 385 IEAIYADIIHGKLDQECKRV----EVDVALGRXARLEDAASIADVLADWCNACEAVLNSV 552
IE + + II + QE V E VA + RLE A I+ A + E V + +
Sbjct: 365 IEELKSRIIELQKTQEIVMVQHVEECQVAEDKIRRLESEAEIS---ASNISQLEKVASDL 421
Query: 553 DQHIQRANHQKQXAIRHQQGIEQKIL 630
+ +Q+ + A H+Q + QKIL
Sbjct: 422 EGRVQKLLEDSRSAENHKQELLQKIL 447
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,515,278
Number of Sequences: 37544
Number of extensions: 357677
Number of successful extensions: 946
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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